Detailed information on CNT30555231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006790, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696501Oryza glaberrimaOryza sativa20.37101.0794.53567reverse complement
CNT30595624Oryza glaberrimaOryza meridionalis19.9475.6189.73555forward
CNT30109401Oryza glaberrimaOryza longistaminata16.1354.4995.1449reverse complement
CNT30576285Oryza glaberrimaOryza barthii27.5159.4791.51766reverse complement
CNT30604093Oryza glaberrimaOryza punctata14.37101.2789.5400reverse complement

Expression of CNT30555231

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MIPRRGSRGAGDGDDRGGGWIQARTPQSAHHRTAPSRQIDPAAVRGKMTDQQQQKRPPRR*

>peptide 2 (55 aa)
MKYNNNVIRDCSNSKSKILLFSFRSNQSWTSKIMNTTEHGSNTLTSEVNNYGGAE*

>peptide 3 (40 aa)
MDIQINNPKPKPTQRRPVRPRAGRSDRSITAGLTGIHSPV*

>peptide 4 (40 aa)
MKMGVGSGDIVRSGVKRTTVEIDGEATSPTCKLMPWMLVA*

>peptide 5 (49 aa)
MISDHHGHRLIPKPTPGPSPQILSQDIESPTHGTNKETIPYSETKLSPT*

>peptide 6 (34 aa)
MLDISVGLIYWNIINTRAKASLSHSLAIHVSHFR*

>peptide 7 (36 aa)
MPRHTEWRREDGHGEDGGDWRVVADSFICLFVCLFF*

>peptide 8 (30 aa)
MEQTKKPYHIPRPSYLQLDSLIANNSITYV*

>peptide 9 (31 aa)
LKVDDDFITSLCVYKVHQQHSLQKFRLNSKP*

Sequence

>CNT30555231
CTCTTAAAGTAGATGACGACTTTATTACTTCTCTCTGTGTTTACAAAGTGCACCAACAGCACTCCTTACAAAAATTTCGACTAAACTCGAAACCCTAACT
CAAAACTCAACTCAATTGCTCTCAAATACGATACCGGGAAGCCTCACGCTCCCCCTCTATTTATACCCGAGGTAGGCAGCCTAAAGCCACGAACCAAACT
CGTACTAGAAGTCCTAAACACCTTAGGAAACCCTCTAGTACAAGAAAGAAACTTTACATAACCAATCGTACCATATTTGGACTCCTTCTAAATTCAACTC
CGCATCCCAATACGCACACAATAACTCCATCGTATGCCATATGTAATCTCCATCAACCACGTGCATCAACTCTAGCCTTAGTATCCCGCATGATCTCTGA
CCACCACGGACATCGTCTTATCCCCAAGCCGACTCCCGGTCCATCACCGCAAATACTTTCCCAAGACATCGAGTCACCTACGCATGGAACAAACAAAGAA
ACCATACCATATTCCGAGACCAAGCTATCTCCAACTTGATTCATTAATAGCAAACAACAGTATTACATACGTATAGTATCCATCTAGAAGCCGTAATCAT
GAAATAATCATGGATATCCAAATAAACAACCCGAAACCAAAACCGACACAGCGTCGGCCGGTCAGACCGCGGGCTGGCCGGTCCGACCGCTCGATCACCG
CCGGTCTGACCGGCATACACAGCCCGGTCTGACCGGACACAATTCCAGCAGTACCTATAGATCACCTGTGAAATCCAATCATCTCCAAAACCACTTCGTG
AATAAATTCCAAATAACAAAACCAATAATCTCCAATGCCCAATTGTTCATCACAGAATAATAATCAAAAACACCTTTGATTTTACAAATAGAAGCACACA
AGAAACTATAGATCACAAAGCTCTTCCTCTAGGACGTCAAGCTACCTCCAATCAATGTCGATTCCAGACATCCAGTGCTGCAAAAGCCTTTGGGTTTAGT
CAACCTAGATTTGTGACAGGACAAGTTTTTAATGAATATAGTTGCACTTCTCCACTCAAACCAAATAAATCAAATAAAGAGTGGTCTGATCTAATAATGC
ACACAAAATCATAGATCATGGATAAATGAAAGTATTAAAAACGAATTAACTCAACATTCTGATAGATCTACTGGGATTTGTAGCTTTATTTAGCATTATT
TGGTACGAGCAAACATTGCCTGATAAGTAAATTCACAGATTACACACCCATATAAAAATAAATTGTAAAGTCCCAACTTAAATACCAATGAAATATAATA
ATAATGTTATAAGAGATTGTTCAAATTCCAAATCAAAAATCCTTTTGTTTTCCTTTCGAAGTAACCAATCATGGACAAGCAAAATAATGAATACTACTGA
GCATGGTTCAAATACTTTAACGAGTGAGGTAAACAATTATGGGGGAGCAGAATAATGAGTAGCACTAAGCATGGTTGAAATACTTAAAAAAACAAAAGGT
TTTCACCACAAATAAATCAGTCTTTGGAATTCCTCAATTTGTCTTCCTCTCCCACACAGAGAGGATGATAAGCTTCGAGGTAGTCCCTGAAAGCAAACTT
TAGGGCACAAAAGCAAAACTCATAATTAGCCCTGAAAGCAAATGTAGAAAAGAGAGAAAAGAATGTTGTGCATATTATCATGGGTAAACATATGACTATT
CAGTTTAAAAGGTTTTGTCCTGAAATTATTTTAGCTCAAAGATTGTAGTGTTGGCTAAGGGACCCATCATTCTTCACTAAAAGTTTCATTTGAGGTCGTA
TAACATAGTAGAAAAAGCTGGTGTTAGAGACTACACTGAACCGATCACCGCAGCCGGCAGCTGTACAGCGAGACAACCAAATGAAACCAGACCAGAACTT
CTATAAGTATTCATGTTAGACATTTCAGTTGGCCTTATTTACTGGAATATTATCAACACAAGAGCTAAAGCATCTCTTTCTCATAGCCTGGCCATCCATG
TTAGCCATTTCAGATGATGCATATTCTCAACTTGAACGTATGCATCACATATCAACAACTTGAATGCCTACATGACAGATCCACATAAACAATGAAAAGA
GGAGAAATAGGTCTTACCTTCACTGCAAGCATATGAAGATGGGAGTGGGATCAGGCGACATTGTGCGATCTGGCGTAAAGAGGACCACCGTGGAGATCGA
CGGAGAGGCGACATCACCGACTTGCAAACTGATGCCGTGGATGTTGGTTGCGTGATGGAGATGGCCGTGTTGGTGTCTGGATCCAAGCGAGGAGGAGCGA
TTCAGCAGCAGCGAGGGGGAAGAGCTCTCCCCCGATGATTCCGAGGCGGGGCAGCAGAGGAGCCGGCGATGGAGATGATCGTGGCGGTGGCTGGATCCAG
GCGAGGACACCCCAATCCGCTCATCACCGAACCGCACCATCGAGGCAGATAGATCCAGCAGCAGTGAGAGGGAAGATGACGGATCAACAGCAGCAGAAGC
GACCACCCCGCCGATAGCAGCGAGAGGCACACGACGTGAAGCCAGATCCACCACATCCTCCTCCTCCTCATCTTCCCCTTCTCCCTCCCAAATCTCACAC
TCCATCCAACACTTCCTCTCGCGAGCGCCCCAACGCGGGAGCTCAACAGCCCGCCGAAATCCAATGCCTCGCCACACGGAATGGCGGCGTGAGGACGGTC
ATGGGGAAGATGGTGGAGACTGGAGAGTTGTTGCCGACAGCTTCATCTGCCTGTTCGTCTGCCTGTTTTTTTAGTGCGAGTGAG