Detailed information on CNT30555228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696509Oryza glaberrimaOryza sativa43.4146.5897.95293forward
CNT30522452Oryza glaberrimaSetaria italica36.5936.6579.76247forward
CNT30179972Oryza glaberrimaSecale cereale27.2625.1480.98184forward
CNT30251661Oryza glaberrimaAvena sativa20.312.7783.21137forward
CNT30110647Oryza glaberrimaOryza longistaminata43.4152.2398.29293forward
CNT30103788Oryza glaberrimaOryza rufipogon44.370.8599.33299forward
CNT30577832Oryza glaberrimaOryza barthii44.349.5100299forward
CNT30551656Oryza glaberrimaOryza brachyantha35.1127.7887.34237forward

Expression of CNT30555228

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MHDFDLKLLLCRQSDRGQDGMIKRPVRIIFITSLPEGSGCGTPAQAAAWAQAWAQASAWVAPASAPAWVAPASCGSGL*

>peptide 2 (51 aa)
MGSVSCRQWQQRCPSTLARSWMAPDQGMAHCWRCGAERCSRNCQGRRRGGR*

>peptide 3 (38 aa)
MQSELSRSASRGTLKAPVPSSFPAALLSYSPLMFLHLIA

Sequence

>CNT30555228
GCTAACCTCTTACGATCCAATGCCTTTGGCTGATACAGTGAATAGTCCGCCAGAACAGAACTGATTAAATATAAATAAATTATCTTACCATATATAACTG
CATTTGATAGAGAAGAAATAGATACAAGTACAAATTAAAACTCCTGTCGATGAAAGCTAATGCATGACTTTGATCTCAAACTGTTATTATGCAGACAATC
TGACAGGGGGCAGGACGGCATGATCAAACGTCCAGTGCGGATAATATTCATCACTTCTTTGCCGGAGGGCTCGGGTTGTGGTACTCCGGCGCAGGCTGCG
GCTTGGGCTCAGGCTTGGGCTCAGGCTTCGGCTTGGGTGGCTCCGGCTTCGGCTCCGGCTTGGGTGGCACCGGCTTCTTGTGGAAGTGGTCTATGATCTT
CTTCTTGATGGGACCGCAGATGGTCGCCGACGCGCACAACGCTGATGGGTAGTGTGTCTTGCCGGCAATGGCAACAAAGGTGCCCTTCGACATTGGCACG
ATCTTGGATGGCTCCTGACCAGGGCATGGCTCATTGTTGGCGCTGTGGAGCTGAGCGATGCAGTCGGAACTGTCAAGGTCGGCGTCGAGGGGGACGCTGA
AAGCGCCAGTGCCATCGAGCTTTCCGGCAGCCTTGCTCTCGTACTCACCGTTGATGTTCTTGCACTTGATCGCCA