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Detailed information on CNT30555227


BLAST search results

BLAST vs Swiss-Prot:
sp|P14578|COX1_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402960Oryza glaberrimaBeta vulgaris65.0363.4189.32740forward
CNT30187765Oryza glaberrimaSecale cereale41.9260.6997.06477forward
CNT30223362Oryza glaberrimaHordeum vulgare24.2562.4498.19276forward
CNT30437404Oryza glaberrimaAegilops tauschii26.1947.1598.66298forward
CNT30605231Oryza glaberrimaGossypium raimondii64.519.6394.14734forward
CNT30682285Oryza glaberrimaTriticum urartu65.299.4998.25743forward
CNT30371457Oryza glaberrimaOryza glumipatula67.4933.64100768forward
CNT30481012Oryza glaberrimaChara braunii26.0127.6985.14296forward

Expression of CNT30555227

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRRGMPESPKKCMGKKVRLTPKKVIQKWIWPKVSGYVRPKILPTQ*

>peptide 2 (68 aa)
MADILVVSGEEPSDQICHLIFVLKTFKPYQRGARGWKRRTLILNQVSITSSAFISSVFKIAELIQKSC*

>peptide 3 (61 aa)
MSSPEFARTIPVSPPMVNKKMNPTANNMGVLYCIEPPHMVAIQLKIFIPVGTAMIMVAAVK*

Sequence

>CNT30555227
GTTCTGTTAGGTTCTTATCTTAGATTCCGTCATGACGGAGCCTAGACCTTTTCTTCTTTTACTTCACACAATAGAAAATTGAATTAATATATATTAAATA
TATTATTTTATAAGGGCAAATATATATAATATATAATAATATTAAATATATTATTTTTTATGGGCAATAGTTAGGAGAGGTGCGCCTAGCTTTTTGTCTC
TTTGATAGCTGGAAGTTCTCCAAAAGTATGAAAGGCTGGAGGGCTTTGTACCAACCATTCTAGTGTGGTTGGATTCTGTTCAACAGCCCAAGGACTTTCC
GCACATCTTTTGTTCTTTCCACTGCTTGAAGTGATTGCGACAACTACGAAGAAACGACGAATCCCAACTACGGATATATAAGAACCGAAACTGCTCAGAG
CATTCCATCCGGCGTAAGCATCTGGATAATCTGGAATGCGACGTGGCATGCCCGAAAGCCCTAAGAAATGCATGGGAAAGAAGGTCAGATTAACCCCGAA
AAAAGTAATCCAAAAATGGATTTGGCCTAAAGTTTCAGGATATGTCCGACCAAAGATTTTACCCACCCAATAGTAAAATCCAGCAAATAAAGCAAAAACG
GCTCCCATAGAAAGTACATAATGGAAATGTGCAACCACATAATAAGTATCATGTAGAGCAATGTCTAGCCCAGAGTTTGCTAGAACAATTCCAGTGAGCC
CTCCTATGGTGAACAAAAAGATGAACCCTACAGCAAATAACATGGGTGTTTTGTATTGTATCGAACCTCCCCACATGGTAGCAATCCAACTAAAGATTTT
TATTCCAGTGGGCACAGCTATGATCATGGTAGCTGCGGTGAAGTAGGCACGCGTATCAACGTCTAAGCCCACAGTAAACATATGATGAGCCCAAACTAGA
AATCCAAGAACACCTATACTTATCATGGCCGATATCCTTGTGGTTAGTGGAGAAGAGCCATCGGACCAGATTTGCCATTTGATTTTCGTTTTGAAAACTT
TCAAGCCTTATCAGAGAGGGGCTCGGGGCTGGAAGAGAAGAACCTTGATACTAAACCAAGTTTCGATAACTTCTTCAGCTTTCATTTCCTCCGTCTTCAA
AATCGCAGAGTTAATTCAAAAGTCCTGTTAGGTCACAT