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Detailed information on CNT30555153


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369953Oryza glaberrimaOryza glumipatula18.0937.3891.13203forward
CNT30576349Oryza glaberrimaOryza barthii11.9442.2793.28134forward

Expression of CNT30555153

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MEEGELPVAGGRRLQYGAGVEWRRLGVGGGGDWEEDELRCRGTGRNRGGALVAVKGIWRGGKQARLHWTWW*

>peptide 2 (67 aa)
MAVELDQFAHQDMNIRVINSSWIEAWPPPRPPNQQRVTRLPPFWICRALLVALPFCPPRRIDVAVTG*

>peptide 3 (41 aa)
MRGKMKKVGSPSGFSGVMIVMQPVHYLYACTIAHHPHYACI*

>peptide 4 (35 aa)
MIFTHKLLLQSAVRLHYYVRYNYIFTSRPQIVIIR*

Sequence

>CNT30555153
AACTTTGAGCTGAATTAGAAAAGGCTCTATTGTATCTTTTGTACATTAGAATAAGGTAGAGATTGAGAGGAAGCTCTGGAGGAGTGCCCGGAAGGTTTGG
CGCTCCCTCAGACTTCTTCCTCAACGAGTGTAGCTTCCTAGGAGGAATTCTGGTGGAGTACCGAAGCTGTCGGTACACTCTGCTCCGAGTTTGGAGAACC
TTCTTCTATAAAGGGATCATGGCAGTCGAGCTCGATCAGTTTGCACACCAAGATATGAACATCAGAGTCATCAACTCGTCCTGGATAGAAGCATGGCCTC
CTCCTCGACCTCCTAATCAGCAACGCGTTACTCGGCTTCCTCCATTTTGGATCTGTCGTGCCCTTCTTGTCGCTCTTCCTTTCTGCCCTCCTAGGAGGAT
CGATGTAGCAGTAACGGGTTAGTGGGGAAGGAAGGAGGGGGAAGGAGAGTGTGTAGGCGGCGTTGATTGGGCATGGAAGAGGGAGAGTTGCCGGTGGCAG
GGGGGAGGAGGTTACAGTATGGGGCTGGGGTTGAATGGCGTAGACTAGGAGTTGGTGGAGGTGGGGATTGGGAGGAGGATGAACTTCGTTGCAGGGGGAC
AGGGAGAAACCGAGGCGGTGCGCTTGTAGCGGTGAAGGGGATATGGAGGGGGGGCAAGCAGGCGCGGTTGCACTGGACTTGGTGGTGAGGCAATGGGACT
GAGAGGAGGAATACCTATTAGTAGAAAGCGTAAGGGGAAATGAGGGGGAAAATGAAAAAGGTAGGATCTCCCTCTGGGTTCTCCGGCGTGATGATTGTTA
TGCAGCCTGTACACTACTTGTATGCATGCACAATAGCACATCACCCACACTATGCATGCATATAAATATAATATTTGAATGATTTTTACTCATAAATTAC
TTCTCCAATCAGCGGTCCGATTGCACTACTATGTTCGTTACAATTATATTTTTACATCAAGACCACAAATAGTTATAATTCGATGACAAAATATTTAGCT
CTTCTTTAATTGTTGCACGAAGTTTATTTGGACGTTTCAACTACTCCCTCCGTTTTATATTATAAGTTATTTGACTTTTTTCTAGTCAATGTTTTTAGTT
TGACAAAGTTTATGGATAAAAG