CANTATAdb - search

Detailed information on CNT30555141

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7HKX6|PETG_CALFG, E-value = 5e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30390749	Oryza glaberrima	Triticum turgidum	33.77	23.78	94.35	230	forward
CNT3017135	Oryza glaberrima	Zea mays	25.26	36.52	94.77	172	forward
CNT30608460	Oryza glaberrima	Gossypium raimondii	14.83	36.59	84.16	101	reverse complement
CNT30117202	Oryza glaberrima	Oryza nivara	83.85	30.65	98.07	571	reverse complement

Expression of CNT30555141

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VTNNPTKVIGIRPKTIPNRKTSIISICSRG*

>peptide 2 (35 aa)
MGNESLIPNQEICCVICQLSKVIILRTRSANPSEK*

>peptide 3 (45 aa)
MLVKHLPKLWKIHNSSVILDNTKKQDRVRYRSVKENGFIRWGMSP*

Sequence

>CNT30555141
GTCACGAATAATCCCACTAAAGTAATAGGAATTAGGCCTAAGACGATTCCAAATAGAAAAACTTCAATCATTTCGATTTGTTCGAGGGGATAAAAAAAAG
AGGTACGATTTATCCCTAAATAGTAGTCTAAATTATCCACGAATCTCAATGACCAAGAAAAAAAAGAATTGGTAATCAGTGCGTAGAATACCAGGAATCC
AAAAGAGAGATTTTTTCTTTTCTGCCTTATTCATTCAATTCATTTCAAATAAGACGTATCTTGTTCAAGCCAATAAATAGAGCTAGGGTTAGAGTTAAAG
CAGCCAATAGAAAACCGAAATAACTAGTTATACTAAGCATGAAAGGGTTAAATTCCTTTTTTTTTTACTACACTACATATGTTGGTAAAGCACTTACCTA
AGTTATGGAAAATTCATAATTCATCGGTTATTTTAGATAATACTAAAAAACAAGATAGAGTGAGATACAGAAGTGTAAAAGAAAATGGATTCATCAGATG
GGGAATGAGTCCCTAATTCCGAATCAAGAGATTTGCTGTGTAATCTGTCAATTGAGTAAAGTAATAATATTAAGAACTAGATCAGCTAACCCCAGTGAAA
AATAAAGAATTGAATTTGAAAAAGTTCTTTCTATTTTGGTCTTTTTCAATAGGATGATTTAACCTTCTTTTTGGAGCGAAC