Detailed information on CNT30555133


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001006, E-value = 7e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369977Oryza glaberrimaOryza glumipatula36.1250.7590.05372forward
CNT30102475Oryza glaberrimaOryza rufipogon20.7850.8396.26214forward
CNT30577195Oryza glaberrimaOryza barthii26.759.0196275forward
CNT30117522Oryza glaberrimaOryza nivara56.1257.7497.06578forward

Expression of CNT30555133

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MDDDGGGVLALPVPLPQRACPPLVSSAGRPLPAQSAAAKVPEDGHRLLLRRRHDRQAQRPLLHRHERVLLLQRHRRTPASSPDLPVRFASCWLYT*

>peptide 2 (98 aa)
MAAASSLSPSRSRSAPARRSSPPPAGRSPRSLRRQRFPRMDTGCCSVVATIARHNVPCCTVTNAFSCFSATAELQRQVRTCLFGLLPAGCTHEVIQDQ*

>peptide 3 (57 aa)
QRGTHVGPTCHSARVAGGGEEVRRRRVRRRGWTIGEAREAAEAAATIRDKGGGGCDA*

>peptide 4 (79 aa)
SVGPTWAPHVIVPGWLAVGRRSGGGACDVEVGPSERPGRRRRRRRRYGIRAAAAATLEKGEAAGGADAVHVNGVAGGSM*

Sequence

>CNT30555133
CAGCGTGGGACCCACGTGGGCCCCACATGTCATAGTGCCAGGGTGGCTGGCGGTGGGGAGGAGGTCCGGCGGCGGCGCGTGCGACGTCGAGGTTGGACCA
TCGGAGAGGCCCGGGAGGCGGCGGAGGCGGCGGCGACGATACGGGATAAGGGCGGCGGCGGCTGCGACGCTTGAGAAGGGAGAGGCGGCCGGCGGCGCCG
ACGCCGTCCACGTCAACGGCGTCGCCGGCGGGAGTATGTGACCGCGGGGCAGCGGCGGGCGGAGCAGGCGGTGGCGGGAGGAGATCTGCAGCCATGGACG
ACGATGGCGGCGGCGTCCTCGCTCTCCCCGTCCCGCTCCCGCAGCGCGCCTGCCCGCCGCTCGTCTCCTCCGCCGGCCGGCCGCTCCCCGCGCAGTCTGC
GGCGGCAAAGGTTCCCGAGGATGGACACCGGCTGCTGCTCCGTCGTCGCCACGATCGCCAGGCACAACGTCCCCTGTTGCACCGTCACGAACGCGTTCTC
CTGCTTCAGCGCCACCGCCGAACTCCAGCGTCAAGTCCGGACTTGCCTGTTCGGTTTGCTTCCTGCTGGCTGTACACATGAGGTCATTCAAGATCAGTAA
CTCATACTCTATTCTAGCAAGCTGGCTGTTGGTGAGAATTCTGAATTCTCATTTCATCGCCTAACGAAGATCGAAGATCGGAGTGTTATACATCAATCAA
TTTCTCAGCTGGGAGTGTTACTCCTGTATTGCTCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATAGCGAGGTAAGAAAGCGAAACCG
GCGCCACAAAATATCTTGAAATTCTGCTTGTTCATATCATGTTCTTTTGATTAAAGAACAGCTTAGCTTGAGATTGTTCTGTTCACTTGCAGTTTGCAGG
AGTAACACAGCTTATTTTTGCATTTCTGTATCTTACTATCCTTTCTACATAAGTACTGTGATTATCTGAACAAGATGGACTTCTGGAGATGTTTATCGAT
GTGATTTGTGATTCTCTCTCTGGCTTCCAC