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Detailed information on CNT30555074


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000044, E-value = 7e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370871Oryza glaberrimaOryza glumipatula11.7977.3695.12164forward
CNT30108697Oryza glaberrimaOryza longistaminata31.78100.2399.1442forward
CNT30103565Oryza glaberrimaOryza rufipogon33.1419.7999.57461forward
CNT30577954Oryza glaberrimaOryza barthii35.0816.1100488forward
CNT30117686Oryza glaberrimaOryza nivara35.081498.98488forward

Expression of CNT30555074

Peptides detected in this lncRNA

>peptide 1 (42 aa)
QTELEALLSFLSPCHGRLSLSSADLPHRSNTGQSLAPSSLPR*

>peptide 2 (49 aa)
MRGIHFSPFPSSSTSESNLTGALSLLPVHDLPSAVPAISLTPFAGHCHP*

>peptide 3 (56 aa)
KPSLKPSSLFSLLAMAGYHCRRPISLTGAIPANPSRHRACLDERNPFFPFPLFLHL*

Sequence

>CNT30555074
ACAAACCGAGCTTGAAGCCCTCCTCTCTTTTCTCTCTCCTTGCCATGGCCGGCTATCACTGTCGTCGGCCGATCTCCCTCACCGGAGCAATACCGGCCAA
TCCCTCGCGCCATCGAGCTTGCCTCGATGAGAGGAATCCATTTTTCCCCTTTCCCCTCTTCCTCCACCTCTGAATCAAACCTCACCGGAGCTCTCTCTCT
CCTCCCGGTTCACGACCTTCCATCCGCCGTTCCGGCTATTTCCCTTACTCCCTTTGCCGGCCACTGCCATCCCTAGGTGCGTTGCAGTCGGGAACACCAC
TGGCCGCCGGCATCACCGCCTCCTCGCCACCGGAGCCCGGCGCCCCCTCTCCTCCTCCTCTCTGTTCGACCGAGGAGAAAAAGAAGAAAGAGACGGGAAG
AAGAAGAAGAAGAGGAGAAAAAGAAAAAGAAAAAGGAATCCCTGACAGTCCGTTTGAGTTCTTACTGAAGCCGGGAGTTCAATCATATAAGTTAATCTCA
TTTTAACTTAGTTCTCAAGTATAGATTAGATAGATGGTTTAAGTCTATAGCAAAACACTAGAGTTGAGTCATCATATAGCTTCTGCTGTAATAGTTAGCC
ACAAGCTTGTAAATACCCTTATATTTTGTAATATTATCTCCTTTGAAACCTTGATCAAATGTATGCAATGAAGATCCAGATCGTTGAACATGTATCAATC
TACTGATACAGGGCTTGATACAGTCTAAACATGTCGGTTTCCGAATCATTAGTTTTGGGACCCCACACCAAATTTCTTCCTCCTTGGCATAGGTGACTTT
CAATAGTCCACCAAGGAGTGATGGCAGGATAAAAGTGACACTTCTCTACCATGCTGAACCATCCCAGAAAGCTTCTCCGACCACTACATTCTATTTTGCA
TTGAGAGTTCAGGTTACAGTTTCCAATCCAACCATACGCTCATTCATTTCTTCCTTAGAATGGAAATATTTGTGTTGGAGCATTTTCAGAATTCGAACAA
GCAAAGTTCTGTATAGTATCACAACTACCTAGCATCAGTGATAAATATAGATGCTACTCAAAGCTTTTTAATTAGTATAGTATTCCTTTTCACCAGAGTT
GATATGGGAGAGAAATTATAGAACTCCTGGAAAGTGATGTAGTTTTTTTTATAGATGTGGGATATTTAAGTATCTTAATCTGTTGATTTAAAATTATTGT
CATTGGCAAGCATTGATGATATATGTCATTGGTAAGCATTGATCTGATCATTGCTTAATCTCTTTTCCTTAATTTGTATTGAAATACTACTAGGAAGTAT
TCAATTCTTAGCACTACTTAACACTGATCCAATACAAAGATGATCTGATTGTTCACCATCAAGTGAACACTGTAGTTTACCAATACACAAT