CANTATAdb - search

Detailed information on CNT30555029

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30720485	Oryza glaberrima	Triticum spelta	17.06	27.39	98.84	86	reverse complement

Expression of CNT30555029

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MISTSLRLSCLCPGIVLKFEASPKTESCFISPC

>peptide 2 (79 aa)
KASKRSRSWHQLQSSRTVNSTLDGTFPLMYLSIAMTPLWASKIISLLSGKHLPVLRRLVVQHLPISSRSSTSHTVSNVI*

Sequence

>CNT30555029
AAGGCATCTAAGCGTTCAAGATCATGGCACCAGCTGCAAAGCTCGAGAACGGTTAACTCAACCTTGGATGGAACTTTCCCCCTGATGTATCTTTCGATTG
CCATGACCCCTCTATGGGCTTCCAAGATCATCTCCCTTCTTAGTGGAAAGCACTTGCCGGTTTTGCGTAGATTAGTCGTACAACATCTCCCAATATCTTC
AAGATCATCCACATCACATACAGTATCCAATGTAATATAATCGAGGGGGGAGGGGACATACTGGACGTAACAACTCCCGTCGGTTGGGGGCTCTGCCGCC
CTGCCTTTCGATCGATACACAGTTGAGGAGGCCGATCCAGTGATATCGCATTCTCGAGTAAATAACATGTTAGCTCAACCATACTCGTCGCAGAGAAAAA
TCCAATGATTTCCACATCCTTGAGGCTTTCGTGCTTGTGTCCAGGCATCGTCCTCAAATTTGAGGCGTCGCCAAAAACTGAATCATGCTTCATTTCTCCC
TGTT