Detailed information on CNT30554971


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005669, E-value = 7e-175

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694435Oryza glaberrimaOryza sativa68.7550.6998.48330forward
CNT30596307Oryza glaberrimaOryza meridionalis69.3842.2198.5333forward
CNT30370387Oryza glaberrimaOryza glumipatula69.3862.2498.5333forward
CNT30102137Oryza glaberrimaOryza rufipogon94.5840.2598.46454forward
CNT30576628Oryza glaberrimaOryza barthii69.1784.9199.1332forward
CNT30117582Oryza glaberrimaOryza nivara69.3845.1298.2333forward

Expression of CNT30554971

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYAGDWSSSFVSEPGILEHLVTKVLLAPA*

>peptide 2 (30 aa)
SSARRRTGRVARRTAGLGKNWTCRGRSEAH*

>peptide 3 (45 aa)
MPLGVLKIKGMLFMTMTCIMEDGMSRCMQGIGLVALSVNLEYWST*

Sequence

>CNT30554971
AGCTCGGCTAGGAGGAGGACAGGGAGAGTAGCAAGGAGGACTGCCGGTTTGGGGAAGAACTGGACCTGCAGGGGGAGGAGTGAAGCTCATTAGCTGCAAA
CTTGTGGGGGATCAATCAAGAAAATATCACCCACCAACAGAAAGGAGCAGATGCAAACATTTCTGGGCAAGCCAGTGAGTTAAGTGGTGGGTTGGAGGAT
CAGTACTATGCCCCTTGGTGTGCTGAAAATCAAGGGGATGTTGTTTATGACTATGACATGTATTATGGAGGATGGGATGAGTAGATGTATGCAGGGGATT
GGTCTAGTAGCTTTGTCAGTGAACCTGGAATATTGGAGCACCTAGTGACCAAAGTATTGCTAGCTCCTGCTTGAAACTTGTATTATTAATGGGTGAATGT
GTAAGGCCCTGTTTCAGACTTTAGCCCTGCGTGGTATGGTATTGTAATGTTATCTGAACCTTCTAGCTATTATTCTGCTG