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Detailed information on CNT30554953


BLAST search results

BLAST vs Swiss-Prot:
sp|P92555|M1250_ARATH, E-value = 4e-09

BLAST vs NONCODE:
NONORUT001336, E-value = 5e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696068Oryza glaberrimaOryza sativa27.2933.8794.94336forward
CNT30371012Oryza glaberrimaOryza glumipatula89.3636.1298.361100forward
CNT30103210Oryza glaberrimaOryza rufipogon27.2993.0794.05336forward
CNT30604527Oryza glaberrimaOryza punctata25.5199.6886.31314forward

Expression of CNT30554953

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMDLYIKLSVCVPRLISGRGFYAQISSEITSEFPGVTEIYLP*

>peptide 2 (32 aa)
MQSLDRVLHIHEVVMYSSLPYESTLISGNHLL*

>peptide 3 (45 aa)
MPKCSIMVFRLDNSWAVGCKKKATSSAKREVLNLKGPPLSGDKIP*

>peptide 4 (49 aa)
MYCQLTESNAFEMSSLSNMVGVFLLCSLLTGFCTYMKLSCIALFLMKAL*

>peptide 5 (36 aa)
RRGRHRARRRQRHNIMPLVISVVAKVRECVRSVQED*

Sequence

>CNT30554953
GACGGCGAGGACGCCACCGAGCGCGGCGACGGCAGCGGCATAACATAATGCCGCTTGTCATTTCCGTCGTTGCGAAGGTTCGTGAGTGCGTCAGAAGTGT
TCAAGAAGATTAATTGAAGACCGATTATTGCAAGTTAAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTATGGGAG
TGAAGCTGAAGCCATCGCTAGACCGTTATTCGGCTGCTGTTTTTCTTTTGGTTTGTAAGTATGTAACGTTATTATTATGATGGATTTGTATATTAAATTG
TCAGTTTGTGTACCTCGGCTAATTTCTGGACGAGGGTTCTATGCACAAATTAGTTCGGAAATTACTAGTGAATTTCCAGGCGTGACAGAAATCTACCTTC
CATAGTTTTCTAAGGTGAAGAGGTAGGCCCAAGTAACTGGTTGGGAAGCCTTGAACAGCTCCCAGGAAATCCTGCAACAACTGTTGCACATCAATGTTTT
CACAAGCAATTGAGAGAATTTGAGTTTTGTGCGCATTGTTCTTGAGACCAGTTGCTATGCCAAAGTGTTCCATAATGGTTTTTAGATTGGATAATTCCTG
GGCTGTTGGGTGCAAGAAGAAAGCTACATCATCTGCAAAGAGAGAGGTTCTAAACCTCAAAGGTCCACCATTGAGTGGGGATAAGATTCCGTGATGCTCA
GCTTGTTTTATAATGAAGTTAAGGGGCTCCATTGCTAATAAAAATAGTAATGGTGAGAGAGGATCTCCCTGTCTTAACCCCCTTGCACGTTGAATTGCTT
GGCCTGGGCATCCATTCAGGATGATCTTAGAGGTTGAAGTTAAAGAGTGAAGACATCCAGTTTCTCCATCTCAGCCCAAAGCCAAAAGTTGTTAGCACCT
CTATTATGTATTGCCAACTTACAGAGTCGAATGCCTTTGAGATGTCAAGTTTGAGCAACATGGTGGGTGTTTTCCTTCTATGCAGTCTCTTGACCGGGTT
TTGCACATACATGAAGTTGTCATGTATAGCTCTCTTCCTTATGAAAGCACTCTGATTAGTGGAAACCATCTCTTGTAATATTGGTGCTAGTCTATTTGCC
AAGATTTTTTATATTATTTTAGCAAAACTATGAATTAGATTTATGGGCCTGTAATGATCTGCCGATGAGGCATCGCCCTTCTTTGGCAACAGACCGATGT
GAGCACTATTTAATTCCTCAAGCTAGTTTTG