Detailed information on CNT30554920


BLAST search results

BLAST vs Swiss-Prot:
sp|P22686|CB2_CHLMO, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696173Oryza glaberrimaOryza sativa100.6891.1598.92742forward
CNT30187536Oryza glaberrimaSecale cereale48.1740.894.37355forward
CNT30301046Oryza glaberrimaTriticum aestivum57.9451.6392.04427forward
CNT30251938Oryza glaberrimaAvena sativa57.2653.3590.28422forward
CNT30665949Oryza glaberrimaTriticum dicoccoides57.9450.2492.04427forward
CNT30473044Oryza glaberrimaSaccharum spontaneum57.9448.4790.4427forward
CNT30685781Oryza glaberrimaTriticum urartu54.9546.4491.11405forward
CNT30577688Oryza glaberrimaOryza barthii56.9966.4698.1420forward
CNT30604588Oryza glaberrimaOryza punctata47.7648.9692.05352forward

Expression of CNT30554920

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARSSGKTQPSAPSIAHREWITSSSRFLANVSGSAESPAVSHP*

>peptide 2 (36 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSC

>peptide 3 (37 aa)
VPRPLVGKQIKSLLQKHHLLLHLLSVHNTNSIIISSH*

Sequence

>CNT30554920
AAGTACCTAGACCATTAGTTGGGAAACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCAT
CATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGC
CCCACTTCACTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAA
CATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCC
AGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCG
GGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGG
CTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGC
GCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTG