Detailed information on CNT30554901


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000296, E-value = 1e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695742Oryza glaberrimaOryza sativa100.1965.3796.72519forward
CNT30370717Oryza glaberrimaOryza glumipatula92.8699.5986.49481reverse complement
CNT30100324Oryza glaberrimaOryza rufipogon30.514.8694.94158reverse complement
CNT30604461Oryza glaberrimaOryza punctata82.825283.92429reverse complement

Expression of CNT30554901

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MKLQAHRPIIGDAAPCACDSGHTRWNSEMRLDPLERGLRELSIKYSRAENGGRMQIRRPFEFSSVAGGRIGFRHLEDSNLISCCSSMM*

Sequence

>CNT30554901
GGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCTGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTATCAAACCCAAGAAACCCTG
AATGGGTACCTAGCTATATAAATAGGGGTGGGAGGATGACCTAGGGGTGCCTAGGGTCGTGCTCCAACTTGCTGGGGCGCACCCCACATGGGCCCCACCT
AGGCCGGGATCCCAAATGAAGTTACAAGCCCATAGGCCCATTATAGGTGACGCAGCACCTTGTGCGTGTGATTCCGGCCACACGAGATGGAATTCGGAGA
TGAGGCTGGATCCGTTGGAAAGAGGGCTCCGAGAGCTTTCCATCAAGTACTCACGGGCTGAAAACGGAGGTCGTATGCAGATTCGGCGGCCGTTTGAATT
CAGCAGTGTAGCAGGTGGCCGAATCGGATTCCGGCACTTGGAGGACTCGAACTTGATATCTTGTTGTTCATCCATGATGTGAGCAACGGATGTATCCGTA
GTAGCCATGGTCACATCA