CANTATAdb - search

Detailed information on CNT30554882

BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696108	Oryza glaberrima	Oryza sativa	73.09	47.85	96.52	747	forward
CNT30520536	Oryza glaberrima	Setaria italica	47.16	65.94	82.78	482	forward
CNT30103362	Oryza glaberrima	Oryza rufipogon	90.41	82.43	99.46	924	forward
CNT30580794	Oryza glaberrima	Echinochloa crusgalli	47.16	28.69	83.4	482	forward
CNT30496207	Oryza glaberrima	Digitaria exilis	54.79	25.18	82.68	560	forward

Expression of CNT30554882

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSRRRRRRQRTSWRSWRRRCSGRASGAWRRRRRRCRGS*

>peptide 2 (34 aa)
MFWQSVWSLASTEAALSGKLSRAASPRRRYAAWS*

Sequence

>CNT30554882
TAAATAATAATAGTAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAGACATAATAATAATAATAATAATAATGC
TACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCCACGGCCGGAGTAACTGACCAGTGACCG
GCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAACCCTAGCATCTACAGAGG
AAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTTAAAAACTGCTAATCCATGCCCGTCCGTGCGGTGCA
GAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTGGTAGTGTTAATTGGCG
GCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCTGCTGCA
TCTCCGGCACGGTCGCCGGCGTCTCGGCCGTGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCGGCGGACTCCAGGCAGGACGACGCGTCGTC
GGAGGACGGCGACGAGCAGTTGCTGGTGGGCGCGGAGGATGTCGCGGCGGCGGAGGCGGAGACAGAGGACTTCTTGGCGTTCTTGGCGGCGGCGATGTTC
TGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGGCGTTGTCGGGGAAGTTGAGCCGCGCCGCGTCGCCGCGGAGGCGGTACGCCGCCTGGTCGTAGG
CAAGCGCCGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGCCGCGTGCGGTTCCGCGGGAGGCGGATCTCCGCCACCCACTTCCCCCAGTGCCGCTG
CCGCACGCCGCGGTACAGCTTC