CANTATAdb - search

Detailed information on CNT30554866

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697519	Oryza glaberrima	Oryza sativa	55.12	100.33	97.72	307	reverse complement
CNT30104356	Oryza glaberrima	Oryza rufipogon	56.73	62.95	97.15	316	reverse complement

Expression of CNT30554866

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MNSDGEEEGIRRSCVHTYSPNRYPGQNNQGTARLQRCN*

>peptide 2 (64 aa)
MARRRVSAGAASTPIHQIGIQGRTTKALHGCSVVIKSSTSVVGPYAWVGSGGGRNKLSVLTIEF*

>peptide 3 (61 aa)
PPPLLRPSRRAPPLLPSRRYLPLSSPLRLHCQRYSSPHHRGSILPLPPPCTPLAPAHHIHL*

Sequence

>CNT30554866
CGCCACCTCCGCTCCTGAGGCCCAGCCGCCGCGCGCCGCCTCTTCTCCCAAGCCGCCGCTACCTCCCCCTCTCTAGTCCTCTCCGTCTCCATTGCCAGCG
TTACTCATCCCCTCATCACCGCGGCTCCATCCTACCCCTGCCGCCGCCGTGTACCCCACTGGCACCAGCGCATCACATCCACCTCTAATCTCCCGCTACC
CTGAAGAAGGGGGGAAAGGGATGACAGATGAATAGCGATGGCGAGGAGGAGGGTATCCGCAGGAGCTGCGTCCACACCTATTCACCAAATCGGTATCCAG
GGCAGAACAACCAAGGCACTGCACGGCTGCAGCGTTGTAATTAAATCATCGACATCAGTGGTGGGGCCTTATGCTTGGGTAGGCAGCGGAGGAGGGAGAA
ATAAATTATCTGTACTGACCATCGAGTTTTAGATATTAGATTATCATATGGCACCTATCTATATCTGTAATACTGTAGTACTCCGTACTCATTAATCATT
GTACAAATTGAGGAGCATATCTTTCTATCATTTTTACATGAGACTATGTCCTTACTG