Detailed information on CNT30554857


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002308, E-value = 7e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597052Oryza glaberrimaOryza meridionalis47.8693.9585.65962forward

Expression of CNT30554857

Peptides detected in this lncRNA

>peptide 1 (89 aa)
GGKAQRRRRRSGGVTTCSGEGCGRRRPVREADAARSDAVPVPTVPVLLRAQPGPWRRASTLRGPREAGARPVRDDGEDATERGDGSGIT*

>peptide 2 (70 aa)
MVGCGCMVLLVAHMAIKDRFTGTLEDIQCLSQAGMGNCLIYSIAFLWLMHLGKVERDGVQMGPATAFAAC*

>peptide 3 (66 aa)
MAASLDLARPTGGRREAGPRRRRGRHRARRRQRHNIMPIPLFWNIAIARKRVQKMFEEARQVTHSP*

>peptide 4 (45 aa)
MVTCHAWHGDMPVDCVLWVHLCSFGQSRTIRIVVPAVMGDRPDSP*

>peptide 5 (56 aa)
MPHGLMPCRCPPSRFSSARSRGHGGEPRPCAAHGRQARGRSETTARTPPSAATAAA*

>peptide 6 (31 aa)
RRQGAAATAAERRSDNVQRRGLRPAAPRAGG*

>peptide 7 (63 aa)
METKSRAQIVSESVLINRTTLVIHRPSHERTEGELLPVVLNPRPPLLTNPACAAATRPWRDRL*

Sequence

>CNT30554857
GCGGCGGCAAGGCGCAGCGGCGACGGCGGCGGAGCGGCGGAGTGACAACGTGCAGCGGAGAGGGCTGCGGCCGGCGGCGCCCCGTGCGGGAGGCTGATGC
CGCACGGTCTGATGCCGTGCCGGTGCCCACCGTCCCGGTTCTCCTCCGCGCGCAGCCGGGGCCATGGCGGCGAGCCTCGACCTTGCGCGGCCCACGGGAG
GCAGGCGCGAGGCCGGTCCGAGACGACGGCGAGGACGCCACCGAGCGCGGCGACGGCAGCGGCATAACATAATGCCGATTCCACTGTTTTGGAATATCGC
GATCGCGAGGAAAAGAGTTCAGAAGATGTTTGAAGAAGCAAGGCAAGTCACACATTCCCCTTAAGCATGTTGATCCTAATTTATAAATGTTTTATCGTTT
GCAAATAAAATTGCATGTCTTGCTAATTACATGGGAATAGGGTTTAGCTATCTGCTCGCATTTGCCATGTTTACTTGATATCTGTCCTTTGTCAAACCTG
GGTGATAATTGAACTAGCTTATGTTAATTATGTTGACCTAGCTAGAACTATATGCTTAGCCATGCTTAATTACCACTAGCTCACATACTGGGATAATTAC
ATTATTAGACATCTAGTATCGTGACGAGCTGCGTGCTCGAGACATCTGGCCATGTTTCATTGGTCGTAGTTATCCAACTAAAATGCAACTGAATGGTGGG
TTGTGGGTGCATGGTTTTGCTAGTCGCACACATGGCAATTAAGGACCGGTTCACGGGTACCCTGGAAGACATACAGTGCTTATCACAAGCGGGAATGGGT
AACTGCTTGATCTATAGTATAGCTTTCCTCTGGCTAATGCATCTAGGAAAGGTTGAGCGTGATGGAGTTCAGATGGGCCCTGCAACGGCCTTTGCAGCTT
GCTGATTCGCCTAGGCACGAGAAGGGGCTGCCCGCTACCTGTTGAGGAGTGGGGGCGAAACCTGAGGTGTGGTGTGCTTGGTCAGAGGGAGTTATGTAAA
GGGTCTTGTCACAATCACTCGATATGGTGACGTGTCATGCATGGCACGGTGACATGCCGGTGGATTGTGTCTTGTGGGTACATTTGTGCAGCTTTGGCCA
GAGTAGAACTATTCGAATAGTCGTGCCCGCGGTTATGGGCGATCGACCAGATTCACCGTGATTAGTCTCACCCTTAATAAATCGACTCAATGCACTCGTT
AGTTCAGGAGGGATGGTTGGGCGTGTTCAACGTGGTGTAGCGTTGATCAGTGGAGACTTAATATTACCTTAATTACTTAACAGTTTTACTAATTTGCTCA
ATAAATGCTGCCTTTATGCAAATAGCCACAAGCCTTCCGTTGTATTCCCTTGCATGTGTGCATCGTTAGTGTGGCTTGCTGAGTACGGTGGTTGTACTCA
GCCTTGCTTTTATTCCCCCTTTTCAGAAGTGTAGTGCTTCTGAGCTAAAGACGAAGTTAGAGGACCAAGGCTCGGACCCCAGTTGAGTTTTGCCTGTGGA
GTAGAGCTAAAGCCCTGCTAGGATCGCCTTTTTCCCACTGCTGCTGCTTTCGTTTCAGTGTGAGGACTAAGTGCCTCTTCTGTAAGTATTTACGCTTTAT
TTACGTTTGGATCTGTATATTAATTTGTTGTTTTGTGTACCCCTAGTTGGTTCTGAACAGGGATTTAATACACAAAATAGTCTGGAAATTTGGGCTAAAT
TTCTGGGCATCACAGCTGCCTCAGGGTGCGCTCCCTGTCTGCAGGACGAGAGAGGGTGACAAAGAAATCTTCTGGGTAATATTTGGTCACATAAACATCC
CGGTGATGGAGACGAAAAGCAGAGCGCAGATCGTCAGCGAAAGTGTTCTCATCAACAGGACCACCTTGGTTATCCATAGACCAAGCCACGAACGAACAGA
GGGAGAACTTCTCCCGGTTGTGCTCAATCCGCGACCACCACTATTGACGAATCCGGCCTGCGCTGCAGCAACTCGTCCATGGCGAGATCGCCTGTAGTAG
GGAGGGGAGC