Detailed information on CNT30554854


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695924Oryza glaberrimaOryza sativa86.0467.3399.181226forward
CNT30349523Oryza glaberrimaEragrostis tef7.0929.8891.09101forward
CNT30596893Oryza glaberrimaOryza meridionalis47.0251.2692.84670forward
CNT30108984Oryza glaberrimaOryza longistaminata70.3297.7695.811002forward

Expression of CNT30554854

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSSRCSISLESQHFHPLPFQYNHIEIVLESSSSP*

>peptide 2 (36 aa)
MTETRRLRLCHQDAPSPWNPSIFILYHFNTTTLKLC*

>peptide 3 (32 aa)
LPSKTTVAKPLSLPCFLISTSQACSLHLSGFM*

>peptide 4 (45 aa)
MERSCYCFKFKAAADQRSPPVSSQMIGWKNKFCISSGGCVSTELT*

>peptide 5 (39 aa)
SLQNNGGKTSLPPLFPDLHLSSLLTAFEWVYVEGLALGD*

>peptide 6 (50 aa)
MQREHWPGTTGIYGLHQPTNRSKAALKIGRKGPMPLKHFKERESQGQYDL*

>peptide 7 (48 aa)
MALNGSAAKHFQDTIVTLLGGFWNLDEMELDRGEESVLELCQMGQPDQ*

>peptide 8 (60 aa)
MTCEEPERAFTSHGYIWIETRRPNNLLAGNLGLFKGLSELPKQSGAPRGHKTHILVRAVR*

Sequence

>CNT30554854
CTTCCCTCCAAAACAACGGTGGCAAAACCTCTCTCCCTCCCCTGTTTCCTGATCTCCACCTCTCAAGCTTGCTCACTGCATTTGAGTGGGTTTATGTAGA
GGGCTTGGCATTGGGGGATTGATAGCAATAGGCTGCTGTGTATATGCATTAAAGAGAGCTCACCAGCTCTAGTAAGTGCTATTCAATGCAGAGGGAGCAC
TGGCCTGGTACAACTGGGATTTATGGACTTCATCAACCAACCAACCGTAGCAAGGCTGCTCTGAAGATTGGAAGAAAGGGACCTATGCCTCTCAAACACT
TTAAGGAGAGGGAGAGCCAAGGACAATATGACCTGTGAAGAACCAGAAAGAGCCTTCACATCACACGGTTACATCTGGATCGAAACGAGACGCCCTAACA
ACCTACTCGCAGGCAACCTGGGATTATTTAAAGGGCTGTCTGAGCTGCCGAAGCAGAGTGGTGCACCTAGGGGTCACAAGACTCACATCCTTGTCCGGGC
AGTTCGCTGATCGCCAGACGGCTCCTTAATTCTCTCAACAGAAGCCTTTAATCTGTATTCAAATGGCTCTAAATGGATCCGCAGCCAAACATTTCCAAGA
TACAATCGTAACTCTATTGGGTGGATTCTGGAATCTCGATGAAATGGAGTTAGATCGGGGAGAAGAATCAGTACTGGAACTATGTCAAATGGGGCAACCT
GACCAGTGACTAGTGACCACTGCTACGAGCTGGAACCTGTTAAATTTCCATGCCCATCCATCCATATGATATATTTCCCACTCACCACCAGTTTTTCTGA
ACCTGATGCAATTATGCAAGTAATCAAGCAATCAACCCACCGGTGAAGATGTTGGTCAATGACTGAAACTAGGAGGCTAAGGTTATGTCATCAAGATGCT
CCATCTCCCTGGAATCCCAGCATTTTCATCCTCTACCATTTCAATACAACCACATTGAAATTGTGCTAGAATCATCATCATCACCATGAAACAAAGGAAA
AATGGAGCGATCTTGCTACTGTTTCAAGTTTAAGGCGGCGGCAGATCAGCGCAGTCCTCCTGTCTCTTCACAGATGATTGGCTGGAAAAACAAATTCTGC
ATCTCATCTGGTGGTTGCGTCTCAACGGAGCTGACGTGATGGTCTGACAAAGATGTTTCAAACCATAAATTAGTCACTGACAGCCTGCTTCTGTTGTTCG
CCGAAATTCTTTTAGAAGACTCAGTTTGATTACTGAATAGTAGTGATTGATTTTGGTCATTTGGGGCGCCGTCTGCATGTTCCATCCTGCCTACTGGTAA
AGATTAGTGATGGTAATACAAAGGAGTACATATGTTCAATGTTCATAGCAATCCTCTACAATTGTCCTTTCAGATACACAAATTTGAACTGAATATGATT
TTGTGAAATGTGAAAAGGAGAATGG