Detailed information on CNT30554828


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Oryza glaberrimaOryza sativa79.1260.0397.58413forward
CNT30510308Oryza glaberrimaSolanum lycopersicum13.0326.3686.7668forward
CNT30250601Oryza glaberrimaAvena sativa16.282096.4785forward
CNT30371090Oryza glaberrimaOryza glumipatula79.3185.8997.58414forward
CNT30107297Oryza glaberrimaOryza longistaminata74.5286.6499.49389forward
CNT30149846Oryza glaberrimaBrachypodium distachyon31.0336.5785.8162forward
CNT30103269Oryza glaberrimaOryza rufipogon79.3146.0597.83414forward
CNT30577638Oryza glaberrimaOryza barthii78.7463.4398.54411forward
CNT30594767Oryza glaberrimaEragrostis curvula18.3937.2189.5896forward

Expression of CNT30554828

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MTTMALSRPPPSCSRRRRPPAAACRRQEGSLEEQHHQVLHRLVVLVSIGTLAELIHDG

>peptide 2 (35 aa)
HIKKIVSKIDVLLRCKEMGATEKKKGPFKLRTKWR*

>peptide 3 (33 aa)
MSASGGQSRRAASPGPSQTCRSCQHRHACGAHP*

Sequence

>CNT30554828
GCATATCAAAAAAATTGTATCAAAGATAGATGTACTACTACGATGTAAAGAGATGGGGGCAACAGAGAAAAAAAAAGGCCCATTCAAGCTAAGAACAAAG
TGGAGATAATGCAGAATCAAGAACAAAGAGTTACTATAAAAGGGCTAATGCAGAATAAGAAAATACAGATTCTGGATTAATTAACTAGCATATTTAAATT
TAAAACGTAACTGTTTGAGCAAATACCACGAAATGTTCAGGAGCTAAGATACGGCAATACCGATACATCCAGCATAGCAAAAATGGCGAAGAGCACAGAG
TCAGATAAAGCTATAGAGAACTAGGGCTCCAGGAGATGGGGGCCGAATGACAACCATGGCGCTTAGTCGACCTCCTCCATCTTGCTCTCGCCGGCGTCGT
CCTCCAGCGGCGGCATGTCGGCGTCAGGAGGGCAGTCTCGAAGAGCAGCATCACCAGGTCCTTCACAGACTTGTCGTTCTTGTCAGCATCGGCACGCTTG
CGGAGCTCATCCATGATGGANN