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Detailed information on CNT30554808


BLAST search results

BLAST vs Swiss-Prot:
sp|P27939|AMY3C_ORYSJ, E-value = 2e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3068090Oryza glaberrimaLeersia perrieri34.2329.8494.76191forward
CNT30103497Oryza glaberrimaOryza rufipogon69.7164.6299.74389forward
CNT30604590Oryza glaberrimaOryza punctata25.2727.5492.91141forward

Expression of CNT30554808

Peptides detected in this lncRNA

>peptide 1 (73 aa)
LEMSTRANYQIALSSAAATNPLSAAPPPLGAIPSIFSGGAEARRVEVLPSPPSSPLYWFGGSAERRSPSGPIR*

Sequence

>CNT30554808
CTTGGAGATGTCAACTCGCGCTAATTACCAGATTGCCCTCTCCTCGGCCGCGGCGACGAATCCCCTTTCCGCGGCGCCGCCGCCGCTAGGTGCCATACCG
TCGATCTTCTCCGGCGGCGCCGAAGCACGCCGCGTCGAAGTCCTCCCCTCTCCTCCGTCCTCTCCCCTCTACTGGTTCGGCGGCAGCGCGGAGCGGAGAT
CTCCATCCGGGCCGATTCGGTGATTCTTCCTTCGGTTCGGCACAAAATAGTCCTGAAAGAAATATTTGGCCTAGTGGCGCCGCCCTGCTGGAACTCTAAG
ACCACTCTTTTCCCAGACGCAGTAATTGTTGCCGTGAGCAACGACATGGAAGTCTGACGGGATCAAGTTGCCCACATCATACCGAGTCCCAATCTTTGTG
ATCACCTTGTCATCGATCATGGCGACGTAGACATCTCCGTCAGCAGCAAGGATGTTCAGCTTGCTCCCAGGATGAATTCCATTTCTTGACCTCACCGCGG
CCAATGTGCTGATCTCCTGCTTCAAGTTCCAGTCAAACACATGGTCGTAGAACTGTAC