Detailed information on CNT30554769


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003629, E-value = 6e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695938Oryza glaberrimaOryza sativa10071.2596.41223forward
CNT30596242Oryza glaberrimaOryza meridionalis22.4215.159050forward
CNT30111144Oryza glaberrimaOryza longistaminata28.2523.6810063reverse complement
CNT30101354Oryza glaberrimaOryza rufipogon94.6296.3598.1211forward
CNT30578316Oryza glaberrimaOryza barthii10067.5895.96223forward

Expression of CNT30554769

Peptides detected in this lncRNA

>peptide 1 (34 aa)
DAAASEDPLYVEVEADVWESEQEEEFLEDEGFGV*

>peptide 2 (58 aa)
TLQLRKIRSTWRLKPTFGKASKKRSSWKMKALVSSSCLPSSACGRRPSLPLFPVCLCV*

Sequence

>CNT30554769
GACGCTGCAGCTTCGGAAGATCCGCTCTACGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGAAGAGGAGTTCCTGGAAGATGAAGGCTTTGGTG
TCTAGCTCGTGCCTGCCGTCAAGCGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCCCGTTTGTCTTTGTGTGTGATGAGCCTTCGCCGCCCATGTAA
TAAATTAATTATTTACGCTTCCG