Detailed information on CNT30554746


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523910Oryza glaberrimaSetaria italica4.5428.6293.5593forward

Expression of CNT30554746

Peptides detected in this lncRNA

>peptide 1 (50 aa)
TVSNYPTTNPFFRDLERQEVVCERRTSGTRRRRRRCQGAVVATLTDELTS*

>peptide 2 (40 aa)
MFQSTAFLFFCSTSFCCLGIHVLVSNHIEVHYTFMCHVSC*

>peptide 3 (40 aa)
MDICWLGRQGNLYIGSTWVCNVGVSPTHCIHVGIDPQRQP*

>peptide 4 (38 aa)
MTGGGRRTANGTKTRRPAMVATGSQSSKAAVTKERQPT*

>peptide 5 (33 aa)
MCHHISLGIDTSLRHRRWWWYLASWDVLPLPSS*

>peptide 6 (31 aa)
MVLCSLMHVVDRRESRGCGKGIEGVLANHAR*

>peptide 7 (30 aa)
MTFEFYWTNFFLPWSVGKQLVRSLCRLLYI*

Sequence

>CNT30554746
ACCGTGAGCAACTACCCAACCACTAACCCTTTTTTTCGGGATCTGGAGAGGCAGGAGGTGGTGTGTGAGAGGCGGACTAGCGGCACACGGCGACGTCGTC
GGCGGTGTCAGGGAGCGGTGGTGGCGACCTTGACAGATGAGTTGACGTCCTGAATCCATTTTCGCAGGTGACAGTGGTGTGGTCCCGATGACTGGGGGCG
GACGGCGAACGGCGAACGGAACGAAGACTCGAAGACCGGCGATGGTGGCGACTGGATCCCAATCGTCGAAGGCGGCGGTGACCAAGGAGCGACAGCCGAC
GTGAGAGCGTTGTTACTCGCGTTCTGGTGTCGCTGGTGGTGGGCGCGCTAGCCACTGCCGGATCTAGGCGTAGGAGCCCTCTTCGTCGCTTCTGCTTCTC
CACTGGAGCTGCCGCCGGATGGTTCTGTGCTCCCTCATGCACGTCGTTGACCGGCGAGAGAGCAGGGGATGCGGCAAAGGCATCGAAGGGGTTCTTGCTA
ATCATGCAAGGTAGAGAACTAATTAATTTGCTATGCTTAATCATGCTTCCATCGCCAAATTAATTTGCTAATCATGCTTTGCCACGCCGATCTGCTCCTC
TTTCTCAGCTAGTTTTTTCTTTCCTTTTTCATGCTTTTCTGTTTTTGTAGCTGACGAAACCGTGAATCAGTCGTGAGCAGGCCTGTTGCTGGTGTGTCGT
TTTTCTGATGAATTAATTAGCACCCTTTTCCTGCTCCCATCTGAATTTCAGCTAGGACAAGAACGAGACCAGGAAGCACATCATCCGTAGCCTGAAGCAT
CCCAATTACCAATTCTACATGTTTCAGTCAACTGCATTCTTATTTTTTTGCAGTACTTCTTTTTGTTGTCTTGGAATCCATGTGTTGGTTAGCAACCATA
TAGAAGTACATTATACATTCATGTGTCATGTGTCCTGTTGAGTGATATTTTTTTTGTTGCCTACTAAATTCTACAGATGAAACAAATTTCAGACAAGCAT
TTACAATTTCTCGTTTTTGTGTTCTTGACATGGCTAGCCAGTCAATGCTTTGATTAACTAATAAAGCTGTCTACTTTTTAAAATAGGAATTTTCTGTTCA
AGAATACTTAGGCCGTGTTTAGTTCGTGTGCCAAATTTTTTTTAAGTATACGGATACACATTTAAAGTATTAAACGTAGACTAATAACAAAATAAATTGT
ATATTCACCCTGTAAATTGTGAGATAAATTTATTAAGCCTAATTAATCCATCATTAGTAAATATTTACTGTAGCATCACATTGTCAAATCATGGAGTAAT
TAGGCTCAAAAGATTCGTATCGCAATTTATATGCAAACTGTGCAATTGGTTTTTCGTCCACATTTAATGATCCATGTATGTGTTTAAACATTTGATGTAA
CGGAATTTTTGAAAGTTTAAAGGAACTAAACAACTGCCTTAATGTTCTGAATTTTTTTGGTTGAACATAGCACTTCAAGTAGTTTCCTCTGAACAGCACA
GATGCATGACATTTGAATTCTATTGGACTAACTTTTTCCTTCCTTGGTCTGTAGGAAAGCAATTAGTTCGTTCTTTATGTAGGCTCCTGTACATCTAGCT
GGCCGTCAGCGATGGATATCTGTTGGCTTGGAAGACAAGGGAATCTGTACATCGGCTCGACGTGGGTTTGTAACGTTGGTGTCAGTCCTACTCACTGTAT
TCATGTAGGCATTGATCCCCAACGTCAGCCCTGATATGTGTCACCATATTAGTCTTGGCATCGATACGAGTCTTCGGCACCGGCGCTGGTGGTGGTATTT
GGCGAGTTGGGATGTACTCCCTTTACCTTCATCTTAATATGTAGCAACCTTCTCCGTTATAAGATTAGTCTAATCTTATTCTAAATTGCTATATATTGCG
TCGGATGGAGTAGTCATTGGTTACAATTTTTTTGATTTTTTTTATCAAAATGAATATGTGTATGTCTATTTCCCATATGCCGTAATATTGTATTCATGTT
GTACAGGATAATTTGAAAAAAAAAACCTCTTCTCATATATTGTCATCAA