CANTATAdb - search

Detailed information on CNT30554733

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006839, E-value = 2e-155

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691621	Oryza glaberrima	Oryza sativa	15.29	25.67	97.67	172	forward
CNT3067785	Oryza glaberrima	Leersia perrieri	21.51	19.74	85.12	242	forward
CNT30110252	Oryza glaberrima	Oryza longistaminata	14.49	57.39	99.39	163	forward
CNT30577445	Oryza glaberrima	Oryza barthii	28.8	100	100	324	forward

Expression of CNT30554733

Peptides detected in this lncRNA

>peptide 1 (36 aa)
RERDKRDTPLFTLPSPLSFWVLSPLLPLPSREINAE*

>peptide 2 (37 aa)
MSYASCVVIALPRAARAMRALVGLWHHWFYLLLMNSI*

>peptide 3 (30 aa)
MTWWTGKLSYGYVLRSLLDISFIITEGCQP*

Sequence

>CNT30554733
AAGGGAGAGAGACAAGCGTGACACCCCTCTCTTTACTCTCCCTTCTCCTCTAAGCTTCTGGGTACTTTCTCCACTCCTCCCACTCCCTTCCAGAGAAATA
AACGCAGAGTGAGAGCACCTCATCTCGCCCCCATCTTCCTTCTTCCTCCTTGCCGGCCGAGAGAACTTCATCGTCGCCGCCGTGTTTCTGTGAATCTCCG
GGAACGCACATCTCTTTTTGGAGGCCCGGAGCGCGGCCGGCGTCGTCGCATCACCCAAGCTTCCAGTGTTCCCGACGTTCCAGGCCGAGATACTGGGTGG
TGCTGCTCATTCTAGTTCATCTTCCATCTTCCTCCCAGATGTAACACCGTCAAGAATCAGCCCAAGCCGAGCTCCAGGCGTGGAGAACGCTCGCCTTCTT
TCCCCAGCCCCGATCTAGACCCGTTGGTTTTGTTCCTCCCTGTCCGATCTAGTCGTTCTCGGGTCGTCATCGTGTTTGTTGTGTTGCCGGGCATCTCCAA
CGCCGTCGCTGCTTCCTGGACCTCTCCGACCCCTTTCAGCTGCACGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGG
GCGGCAAGGGCAATGAGGGCCCTAGTGGGGTTGTGGCACCACTGGTTTTATCTTTTGCTTATGAACTCTATTTGAGACTTCCGCTGCTATATTTATGTGT
TGTATGTTGGGACCTCGGACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATACGGGTTTTGATCGCTTGA
GATAATTGGGGATAGCGCTTTGGATCGAGTCACTGGGGTATGCTTTTGGTCGCCACCTTCGAGTGGTTGACAGGCATATGACGTGGTGGACTGGCAAGCT
ATCTTACGGTTATGTCTTGCGCTCACTACTCGACATTTCGTTTATTATAACAGAAGGTTGTCAACCGTGATCATGGACACATTGAGGACGAGTGGCTATT
TATGCGTGTATGGATCCCACTTCTCCAATAGTATGTGGTGGTCGCGTTAGACACTGGATGGTATAATACTCGGGGTGTCCACACGGATGATACTCTAATA
ATCATGAAAGCATACCAGAAAGAAG