Detailed information on CNT30554669


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 2e-32

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674761Oryza glaberrimaSetaria viridis35.9284.6595.59204forward
CNT30315505Oryza glaberrimaCorylus avellana34.5142.8986.73196forward
CNT30435114Oryza glaberrimaAegilops tauschii34.3331.0593.85195forward
CNT30596761Oryza glaberrimaOryza meridionalis45.9533.0498.85261forward
CNT30103076Oryza glaberrimaOryza rufipogon87.6882.5999.6498forward
CNT30577496Oryza glaberrimaOryza barthii42.6145.32100242forward

Expression of CNT30554669

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVGFLLYLASLAASPASFSKMSLMNEFMIDMALEEIPMSGCTCLSTLKMYIL*

>peptide 2 (56 aa)
MDSLRRRRRENHQTPTTLERLRAGELGDGGLLVVPGELGGLAGELLEDVVDERVHD*

>peptide 3 (31 aa)
FSNQRLQPSPLILRSELNGHNHEILTVISKH*

Sequence

>CNT30554669
ATTTAGCAACCAGAGGTTGCAACCATCACCATTAATTTTAAGATCAGAACTCAACGGGCACAACCACGAGATTCTTACAGTAATCAGCAAGCACTAGACA
GGAACACTAGACACAAGAGAAAGAAATCAGAGATCGACAGGGCAACTACCACCGCTGCCATGGACTCGCTACGACGAAGACGAAGAGAAAATCACCAAAC
ACCTACTACACTAGAGCGCCTAAGAGCTGGTGAACTTGGTGATGGTGGGCTTCTTGTTGTACCTGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAA
GATGTCGTTGATGAACGAGTTCATGATTGACATGGCCTTGGAGGAGATCCCGATGTCCGGGTGCACCTGCTTGAGCACCTTGAAGATGTATATCTTGTAG
GTCTCGACGCTCTTCTTGGCCTTCTTCCTGCCGCGCTCCTTCTTGCCCTCGCCGCCCTTCTCCCCCTTGGACGCCGGCAGCCGCTTCTCGGCCTTGGGCT
TCTTCCCGGCCGCGGGCGCCTTCTCCGCCTTCTCGCCGGCCTTCTCCTCCGCCGGCTTCTTCTCCGCG