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Detailed information on CNT30554643


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675796Oryza glaberrimaSetaria viridis29.8932.9591.55142forward
CNT30282434Oryza glaberrimaChenopodium quinoa20.844.0384.8599forward
CNT30187559Oryza glaberrimaSecale cereale31.5822.4987.33150forward
CNT30305074Oryza glaberrimaTriticum aestivum21.2616.1190.1101forward
CNT30224612Oryza glaberrimaHordeum vulgare31.5826.4188.67150forward
CNT30394033Oryza glaberrimaTriticum turgidum20.847.3288.8999forward
CNT30560521Oryza glaberrimaActinidia chinensis20.2113.3584.3896forward
CNT30441217Oryza glaberrimaAegilops tauschii20.8413.3288.8999forward
CNT30721901Oryza glaberrimaTriticum spelta31.5829.4188.67150forward
CNT30352420Oryza glaberrimaEragrostis tef32.6325.0494.19155forward
CNT30477326Oryza glaberrimaArabidopsis halleri20.8411.283.8499forward
CNT3055965Oryza glaberrimaAmborella trichopoda20.6311.2886.7398forward
CNT30323609Oryza glaberrimaAsparagus officinalis21.056.0193100forward
CNT30149623Oryza glaberrimaBrachypodium distachyon29.2628.9687.77139forward
CNT30103103Oryza glaberrimaOryza rufipogon34.7450.6198.79165forward
CNT30584451Oryza glaberrimaEchinochloa crusgalli32.6328.9292.9155forward

Expression of CNT30554643

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MSVSASAVSSSSMLRPSLSMRWILLPKVLGSSRQHGESTTRSETTTFSTLSPSTSLMTLQRPSNFS

Sequence

>CNT30554643
GAATATTCGCAAAATTAATTGATACATCTAACTTGCAAAGGAAAAAATAGACAACTCATGAGGACACTAATATAATACTCATATTTAGCAATATAATTAA
CGTACGCAGTTCGAGAACCCATAGCACATTCTAGCCCCATGCATTGCAGGCTAGGTAAAGGTAAAGCAAATCGCACAAAATAAACCGAACCGACCCAACA
ACGCGATGTTCAAAAGGAAACCCGCTTAGTCGACCTCCTCCATCTTGCTCTCGCCGGCGTCGTCCTCGAGCGGCGGCATGTCGGTGTCGGCCTCCGCCGT
CTCGTCCTCGTCGATGCTCAGGCCGAGCTTGAGCATGCGGTGGATCCTGCTGCCGAAGGTGTTGGGGTCGTCGAGGCAGCACGGGGAGTCCACCACACGG
TCCGAGACCACCACCTTCTCGACCTTGTCTCCGAGCACCTCCTTGATGACCTTGCAGAGACCCTCGAACTTCTCC