Detailed information on CNT30554627


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 9e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102835Oryza glaberrimaOryza rufipogon46.9448.4497.67514forward

Expression of CNT30554627

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 2 (30 aa)
MEDCPRKVDLSDADGRRAATGARAVTDAMA*

>peptide 3 (76 aa)
MMVLCHGSDRWPCRRRTTAARRSTRSSSAPPAAASRPPPASPTARSPGPPPDPTGRTRYRLASCIHPFNYHVSSFL*

>peptide 4 (37 aa)
MHTPTKKKEETRREHLRSPNHRFHQPELIKLLEMPWP*

>peptide 5 (84 aa)
MHAGNNYHNTHSKSESHHIHISLSPPPNSLTSYTCILQQKKKKKQEENIFDRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

Sequence

>CNT30554627
ATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAAC
ACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATG
CAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCAT
ACTCCAACAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCGATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCT
GGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGGCCTTGCCGGCGTCGTACCACTGC
GGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCCGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCTCCGGGTCCTCCGCCAGAC
CCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGTATACACCCGTTTAACTATCATGTTAGTAGTTTCTTATGATGCTCTCTATTGGCAGTAGAAATAT
ATTTTTTTATGTGTGTGCTCACCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGCCTCGTA
GTCGGTGCGCGGGCGAGACGGATGGAGGATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACGG
ACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTG
TATTAAACTGTCCGGGAGTGGCCGGCGCTGCCAGGTGGCCACGGCGGCGAGGGCGGCGACGGACGGCGGAGATCGGCGGTGGGGGTGGATCGGAC