Detailed information on CNT30554571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002231, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690051Oryza glaberrimaOryza sativa54.2167.8395.381126forward
CNT30597213Oryza glaberrimaOryza meridionalis56.8695.5592.131181reverse complement
CNT30369441Oryza glaberrimaOryza glumipatula6.9822.5297.24145forward
CNT3099672Oryza glaberrimaOryza rufipogon66.1565.0994.981374forward
CNT30577342Oryza glaberrimaOryza barthii69.9693.0899.931453reverse complement
CNT30115939Oryza glaberrimaOryza nivara14.4947.5595.02301forward
CNT30551809Oryza glaberrimaOryza brachyantha14.431.7785.62299forward

Expression of CNT30554571

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MKIMVDEICWTWTGDRAMMGGLFPLMQVAPSRSLRTEHFDIYSSTLRTYHMPYLGPACSY*

>peptide 2 (36 aa)
RERDKRDTPLFTLPSPLSFWVLSPLLPLPSREINAE*

>peptide 3 (37 aa)
MSYASCVVIALPRAARAMRALVGLWHHWFYLLLMNSI*

>peptide 4 (40 aa)
MLDVLVSYVSIKCGLLWMGLCLMVVLACCAMLVWTLVVHG*

>peptide 5 (50 aa)
MWIIMDGIMFDGGVGMLCHVGMDFGSPWMMKRAPFGLICLYISELYTCCP*

Sequence

>CNT30554571
AAGGGAGAGAGACAAGCGTGACACCCCTCTCTTTACTCTCCCTTCTCCTCTAAGCTTCTGGGTACTTTCTCCACTCCTCCCACTCCCTTCCAGAGAAATA
AACGCAGAGTGAGAGCACCTCATCTCGCCCCCATCTTCCTTCTTCCTCCTTGCCGGCCGAGAGAACTTCATCGTCGCCGCCGTGTTTCTGTGAATCTCCG
GGAACGCACATCTCTTTTTGGAGGCCCGGAGCGCGGCCGGCGTCGTCGCATCACCCAAGCTTCCAGTGTTCCCGACGTTCCAGGCCGAGATACTGGGTGG
TGCTGCTCATTCTAGTTCATCTTCCATCTTCCTCCCAGATGTAACACCGTCAAGAATCAGCCCAAGCCGAGCTCCAGGCGTGGAGAACGCTCGCCTTCTT
TCCCCAGCCCCGATCTAGACCCGTTGGTTTTGTTCCTCCCTGTCCGATCTAGTCGTTCTCGGGTCGTCATCGTGTTTGTTGTGTTGCCGGGCATCTCCAA
CGCCGTCGCTGCTTCCTGGACCTCTCCGACCCCTTTCAGCTGCACGATTTCGGAGAGTAACGAGCCATATCCTGAGGAGGATAGTGACTACCCTCAGCAG
CAAGGCAAGCACCTAAGCAAATAGAACCTATACTTTCTCTAAAAATGATTTGGTTGCAATCTATACGTATATATATGCATGCATTGCCTAGATATTAATA
TTGTCGGTTTATGGTGTATGGGTAGAACCTATTTATGCATTTAGTTCTTATGTTATTACTGTCCTTATATCCTATTACCATTGGTTGGGATTACTTGGGA
TTTCTTATTCATTAATGCTTAGCCATGCTTAGTGCTAATAGAACCATAGGGATGGACAGTGCTATTAATTGTGGTATATAAACAACTTGCATTATTGGGC
ATAAAACTTGAGCACTTACACTAAATAATGGTTGATGAAAATAATGGTTGATGAAATATGTTGGACTTGGACGGGTGATAGGGCGATGATGGGAGGTTTG
TTTCCCCTGATGCAAGTAGCCCCGTCTAGGTCGTTAAGGACCGAACATTTTGACATCTATTCAAGCACCCTTCGTACTTACCACATGCCTTATTTGGGAC
CGGCTTGTTCTTACTAGTTGTACTGTGATCATTTATACCACGTTGGAGAGTCGTGAGGCAGGTAGCCTTTGGAGGGCCTCGGGTGCCTAGGTTTGGCCGG
GGGTGCCTCCCACGTGGCGCGCCCGCCTTGGTCACATCACGCACGCACGTGATTGAGTCGTCGGGAACCCCAGCGTGGTATAGGTGGTTGGGGTGGGGCT
AAGAAAGGGCATGTAATGAGCTTGAATCACTTGTGTACCGCACTCGACGGGGTGTGTAGCATTTGATCTTTGTTCATTTCGTGTGGGTCCAGTTGTACAC
CTCTGATCAGAGTATAATCTATTCGAATATTCGAATAGCCGTGTCCTCGGTTATGGACAATGCTTGATGTGTTAGTTAGTTATGTTAGCATCAAATGTGG
ATTATTATGGATGGGATTATGTTTGATGGTGGTGTTGGCATGTTGTGCCATGTTGGTATGGACTTTGGTAGTCCATGGATGATGAAGAGAGCGCCGTTTG
GGCTCATTTGCTTGTACATTTCAGAATTATATACTTGCTGTCCATAAATTAAAATGATGCTAGATTTACTTGTCCTTGCTTATTTTACTCATTGATTGCT
CAATAAAATTAGCTTCATGCAAATATTGAACCTACAGACCCACTATAGGCTAGAAAGCTTGCATACTTCTCTCTCCCTTATGTATATATAATTTTGGGTA
AGACTTGCGAGTACAATCTTGTACTTAACCCGGTGTCTGCAATTTCAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGA
GGGCGGCAAGGGCAATGAGGGCCCTAGTGGGGTTGTGGCACCACTGGTTTTATCTTTTGCTTATGAACTCTATTTGAGACTTCCGCTGCTATATTTATGT
GTTGTATGTTGGGACCTCGGACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTAT