CANTATAdb - search

Detailed information on CNT30554566

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30109704	Oryza glaberrima	Oryza longistaminata	42.21	40.47	99.11	225	forward

Expression of CNT30554566

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHP*

>peptide 2 (54 aa)
LVKSDYKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

Sequence

>CNT30554566
ATTTGGTGAAGTCTGACTATAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA
GTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGCGAGTATGATG
GACTGGTAGGTGAGTATGATGGACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATA
TGATGGAGAAGTTGGGCTGTATCCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTG
GTGAGAAAGCCATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCC
TTCATGATATGGTGTCCCAGAGATGGGCGAGCG