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Detailed information on CNT30554477


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 4e-15

BLAST vs NONCODE:
NONORUT000586, E-value = 9e-120

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670689Oryza glaberrimaSetaria viridis10067.5198.76723forward
CNT30524649Oryza glaberrimaSetaria italica53.6711.7797.94388reverse complement
CNT30641383Oryza glaberrimaNymphaea colorata53.1112.2995.31384reverse complement
CNT30550219Oryza glaberrimaIpomoea triloba53.538.9197.42387reverse complement
CNT30702366Oryza glaberrimaQuercus lobata53.5338.8696.9387forward
CNT30378673Oryza glaberrimaArabidopsis thaliana44.8125.9896.3324forward
CNT30619000Oryza glaberrimaSesamum indicum53.5312.6796.12387reverse complement
CNT30283003Oryza glaberrimaChenopodium quinoa47.5836.0297.38344forward
CNT3020470Oryza glaberrimaCitrullus lanatus44.8160.1197.84324forward
CNT30632407Oryza glaberrimaVigna unguiculata53.5314.3397.42387forward
CNT30504586Oryza glaberrimaNicotiana attenuata53.5321.9897.16387reverse complement
CNT3094274Oryza glaberrimaSolanum tuberosum40.810097.63295forward
CNT30300808Oryza glaberrimaTriticum aestivum53.5328.7398.19387forward
CNT30221833Oryza glaberrimaHordeum vulgare52.9728.0696.87383reverse complement
CNT30384972Oryza glaberrimaTriticum turgidum53.5362.5298.45387forward
CNT30569655Oryza glaberrimaActinidia chinensis53.5310.8797.16387reverse complement
CNT30543278Oryza glaberrimaBrassica napus53.5314.3397.42387reverse complement
CNT30508923Oryza glaberrimaSolanum lycopersicum41.6390.1296.68301reverse complement
CNT30147396Oryza glaberrimaMedicago truncatula53.5313.0197.42387reverse complement
CNT30441199Oryza glaberrimaAegilops tauschii53.5338.9798.45387reverse complement
CNT30245388Oryza glaberrimaAvena sativa36.3876.0199.24263forward
CNT307193Oryza glaberrimaZea mays53.5310.1797.93387reverse complement
CNT30605073Oryza glaberrimaGossypium raimondii99.8647.597.23722forward
CNT30216578Oryza glaberrimaKalanchoe fedtschenkoi53.5311.6297.42387reverse complement
CNT3067980Oryza glaberrimaLeersia perrieri22.2753.4996.27161forward
CNT30655407Oryza glaberrimaRosa chinensis53.5311.5896.9387reverse complement
CNT30202530Oryza glaberrimaHelianthus annuus49.6548.9896.94359reverse complement
CNT30718256Oryza glaberrimaMalus domestica golden35.8284.6488.03259reverse complement
CNT30628241Oryza glaberrimaDaucus carota53.5314.3397.16387forward
CNT30682011Oryza glaberrimaTriticum urartu53.5339.6998.45387reverse complement
CNT30346087Oryza glaberrimaEragrostis tef47.5833.2799.13344reverse complement
CNT30357719Oryza glaberrimaLactuca sativa66.6725.8497.93482forward
CNT30484250Oryza glaberrimaChara braunii26.1426.0393.65189forward
CNT30429739Oryza glaberrimaPapaver somniferum53.1111.9496.88384reverse complement
CNT30571801Oryza glaberrimaVitis vinifera10055.497.93723forward
CNT30644906Oryza glaberrimaCannabis sativa18.9542.8194.89137forward
CNT3056076Oryza glaberrimaAmborella trichopoda47.5814.9494.19344reverse complement
CNT30320583Oryza glaberrimaAsparagus officinalis36.6524.1698.11265reverse complement
CNT30118993Oryza glaberrimaCitrus clementina37.7677.5692.67273reverse complement
CNT3038287Oryza glaberrimaCucumis melo10048.2397.79723forward
CNT30331625Oryza glaberrimaDioscorea rotundata13.1429.8798.9595reverse complement
CNT3099471Oryza glaberrimaOryza rufipogon34.8510098.41252forward
CNT30557400Oryza glaberrimaPanicum hallii53.1127.9997.66384reverse complement
CNT3039925Oryza glaberrimaMarchantia polymorpha15.2122.1893.64110reverse complement

Expression of CNT30554477

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNQCLSLPSHTSVTL*

>peptide 2 (29 aa)
MGLPDHYGRLSSLFDQSVSQSGRLIPLRS*

>peptide 3 (57 aa)
MLEPTFAHLRYSLGGILRRKSGLSGLVVVCHHLPPILHIRSRLSLRSYSQGARGLTV*

>peptide 4 (55 aa)
AVLPLTPTVDRNRTVSRRSKPNSRTTFIGEQPNPWDLLQPQDVMSRHRGAKRLRR*

Sequence

>CNT30554477
TCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATTGGCGAACAACCGAA
CCCTTGGGACCTTCTTCAACCCCAAGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCC
CCGGCGTACCTTTGATCCGTTGAGTGAGAGCCCTTCCACATGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGT
CAGGCAGGCTTATACCATTACGCTCATGAGCAGAATCAATGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCTTAGACGAAAGAG
TGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCACGGGGT
CTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGTAGTCGTTACACCATTCGTGCAG
GCCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCTGCCGTTTACCGGGGCTTCCATTCAAAGCTTATCACACTTCTCCT
TCCGACCTTCCAGCACCGGGCAG