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Detailed information on CNT30554461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102489Oryza glaberrimaOryza rufipogon39.4191.5395.22335forward
CNT30577034Oryza glaberrimaOryza barthii52.94100100450forward

Expression of CNT30554461

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRSFALLISAQLSGSHSASVSRIDIPSTGR

>peptide 2 (53 aa)
GCVGSGPRGLAVVASPVGKRRSGRAAAGEIAAPAASRSAGAARCRELQPASIP*

>peptide 3 (31 aa)
MAVSSLMNEYPGSFNIAEQLLTLSIASMASA*

>peptide 4 (48 aa)
MITRIEPISSLVFPSMARFLRISVASFLWSWLPSVYPKISARFLNRKG*

Sequence

>CNT30554461
GGATGTGTGGGTAGTGGGCCTCGCGGGTTAGCGGTGGTGGCTTCGCCGGTTGGCAAGCGCCGGAGCGGGCGAGCGGCGGCGGGCGAAATAGCCGCTCCGG
CGGCGAGCAGATCAGCAGGAGCAGCACGGTGTAGAGAGCTCCAACCCGCCTCCATTCCTTAATACCAGGTTGAATGAGCAGGCTCACCTTTCGCAAGGAA
TGAGATAGTTCTGTCAAGTCTGAGCTGCTGAGCTTGGATTGAGCATGCAAGCATAGATTTTGCAGAAGACTTGCGGCCACGTATTTGTATCTGTCATCTC
GGATCATGGCAGTGAGCTCTCTAATGAATGAATATCCTGGTTCCTTCAACATTGCTGAGCAATTATTGACACTTTCCATTGCCAGCATGGCTAGTGCTTG
ACCAGCCGTAATTTGTAGGGACCGATCAGAATATGTGTTTGATGGTGGATGTTGGGCAAGAAATGCTTGGATCAACCTGCTAATGATCACTCGGATTGAA
CCTATCTCCTCCCTGGTGTTCCCATCGATGGCAAGGTTTCTGAGGATCTCTGTTGCCAGCTTCTTATGGTCTTGGCTTCCTTCAGTGTATCCCAAGATTT
CTGCCAGGTTTCTCAACAGGAAGGGATGATCTGACATCTTCTGCCGAAGGGTTATACCAATTTCCCCACCAGTGTTTGAGAGCCTTGTCAGCAACTTCAG
TGATGAACCTTTCAGTATTTTTGGCTGCGTCTCATTACTGTACCCTATAATCTTCTGGATGAGGTCTTTTGCTTTGCTGATTTCCGCACAGTTGTCAGGA
TCACATTCTGCAAGTGTCTCTAGGATTGACATTCCCAGTACAGGAAGGAG