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Detailed information on CNT3055442


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94HW2|POLR1_ARATH, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300733Amborella trichopodaTriticum aestivum5.440.6787.0685reverse complement
CNT30219855Amborella trichopodaHordeum vulgare6.7442.485.85106forward
CNT30434591Amborella trichopodaPapaver somniferum6.841.6383.18107forward
CNT30148338Amborella trichopodaBrachypodium distachyon6.7425.8586.79106reverse complement
CNT30102868Amborella trichopodaOryza rufipogon6.7447.3285.85106reverse complement

Expression of CNT3055442

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLWYFQSQPCVKHHRCNRWFANSTYHIPTVNPVHIYVETIEF*

>peptide 2 (51 aa)
MCLALLLVDFPVPSNFPAAYLNRLILSSRAQNDNRCRCVWCNHKKRISWDS*

>peptide 3 (32 aa)
MIKTLKSGRRGLLYTINRYFQFAYIFLIHGCL*

Sequence

>CNT3055442
TTATATTTAGGGGTTATTTCTTAGGTTTTTTTAGTATTTTAGGGTTTTTATATTTTTTATTTATTTCATGAATATTATTTATAAATACTATTCACGAGTA
CTGTTCACAGGTACTATTCATAGGGGTAAAAATGTCATTATAAAATTTTAGTTTAAGTTAGGAGATATAGGTCATTTTAATCATTATATGGGCATGTAAT
GCCTTTGAACATTGAATTATAATATATAAGAGATGTGTGGGGCCTTGAGAGGGTCAAATTCCACATGATTTTTAGAAATTGAAAAAGAGAAAGCTTAGGC
TCTTAGTACCCTTGGGTTATGGAGAAGAAACCCTTCATCACATGAATTTTAGAAATTGAAAAAGAGAAAGCTTAGGCTTTTAGAATCCTTGCTTGGCGTA
TGGAGAAGAAACTCCAGGTTTCTTTGACTTGTGCATGTGTTTAGCTTTGTTGCTTGTTGATTTTCCTGTTCCCTCAAATTTCCCTGCAGCATACTTGAAT
CGCCTTATTCTATCGTCTCGCGCACAAAATGATAATCGATGTAGGTGTGTTTGGTGCAACCATAAAAAAAGGATTAGTTGGGATAGCTAGTGCCCTTTAA
TTATCACTATAAATTGTTAAGCGCTGCACCTTATATCCAAGCCATATGATCAAATTTCGAATCCAAGAGATTTCTGCCACAACATTAGCCTCTGTATTTA
GTTTCTATGCTCGATCTAGCCATAGATGAGATTTTTGCTCTTGCTCATCCAGGATACCCAATTTCTTTCTAAATAAACATAATATCTTGAAACTGACTTG
GTTGAGTTAGGATCTCCTGCCCATTCGGCATCCAACTTTCCAATAATGGAAGCAACAAACACATCTTCCATATGATTTCTATGATCCGTAATGCCTTGAT
TGATAGTACCCTTGATATATCAGACTCTTCGTTTTAAGGCTTCCAAGTGAACATTGGTAGGAGCATGCATAAATTGGCATACCTGATTGACTGCAAATGC
AATGTGAGTATGATTAAGTTAAGATACTGAAGCTACCTACATGCTTTGGTATTTCCAGTCTCAACCTTGTGTTAAGCACCACAGGTGTAACCGATGGTTT
GCAAATTCAACTTATCATATCCCTACAGTGAATCCAGTGCATATTTATGTTGAGACAATTGAATTTTGACCCTGGTCGAATCCACTTCTATCCCCGGAAA
AATATCTCAGCTCTCTCAAATCTTTCATTTTAAACTTGTCAAGGAGAGTTCTCTCAATATTTGCTATAAGGCTTGCAGAACTTCCTGTGATTATCATACA
TTAAGAGGATGAGCACAATACCTTTAGTACTATTGTGAATGAATAAGGAGTGATCCCTTGTTGTCCTCATAGAACCATAGACCTCTATTGCATGATAAAA
ACTTTGAAATCAGGTAGAAGAGGCTTGCTTTACACCATAAATAGATATTTTCAGTTTGCATACATATTTCTCATTCATGGATGTTTATAAGATCCTTCCA
TTCTAGTAGCACCTTAGGTTAGGATGGCATAGACCTAACGTTAATGGCGAGGTTGAAATGAAGAAAGGCTTAT