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Detailed information on CNT30554333


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694621Oryza glaberrimaOryza sativa98.691.9999.68632forward
CNT30102477Oryza glaberrimaOryza rufipogon97.9798.7499.68628forward
CNT30576943Oryza glaberrimaOryza barthii97.8296.91100627forward
CNT30117124Oryza glaberrimaOryza nivara97.9796.6299.2628forward

Expression of CNT30554333

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MITSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

>peptide 2 (77 aa)
KASTLSMNAADSSLLAAPPTPPSRGQYRACLWIMCILSAQDVCTRISRLELAISGDPEAKIIDCPFDCICGELKISS*

Sequence

>CNT30554333
AAGGCCTCAACCTTATCCATGAACGCGGCCGATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGGCATGCCTTTGGATCA
TGTGTATTTTATCTGCTCAAGATGTGTGTACAAGAATAAGTAGGCTGGAGTTGGCAATAAGTGGTGACCCGGAGGCTAAGATTATTGATTGCCCATTTGA
TTGCATCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAGATTGAATTTGTGTTTTT
GAGAAGCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTACGAGTCCTGACAATGGGGAGCCATTCCAGAACTTC
CTGGTTGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGCGTGATCATTCAGAAACA
GCGTGCTACAGATCAACACCAAAATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTATATTTTTCTGCATTCTAA
TATATTCGACAATACTCTTGCCGCTTTCATATAAAAAAAAC