« Back to Oryza glaberrima search


Detailed information on CNT30554291


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002948, E-value = 9e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30349956Oryza glaberrimaEragrostis tef31.979.9293.24207forward

Expression of CNT30554291

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGDRPGNSSRVYTSEDKVCRKDMCWSVRAVYDL*

>peptide 2 (47 aa)
MGPGLGEAGRYKMVSEPTLAVSRARVSQLRRHGAHGWCRIGLIGLRV*

>peptide 3 (56 aa)
MKAARCKWARPGRGGSLQNGARPGRGGSLQNGIRADSRGFTGACVAVAQAWCAWLV*

>peptide 4 (57 aa)
ATSFPEANLQRTPRLSVLGLEQFGMGDRPGNSSRVYTSEDKVCRKDMCWSVRAVYDL*

Sequence

>CNT30554291
TTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAAGGTTAAGCGTGCTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTC
CCGGGTGTACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATGACCTATGAAAGCTGCCAGATGTAAGTGGGCCC
GGCCTGGGAGAGGCGGGTCGTTACAAAATGGGGCCCGGCCTGGGAGAGGCGGGTCGTTACAAAATGGTATCAGAGCCGACTCTCGCGGTTTCACGGGCGC
GTGTGTCGCAGTTGCGCAGGCATGGTGCGCATGGCTGGTGTAGAATAGGATTAATAGGATTGAGGGTGTAACATCCCGGCCTAGGGCTTAATAGGATTAA
TAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAAGGTTAAGCGTGCTTGGCCTGGAGCAATTTGGGATGGG
TGACCGACCGGGAAATTCTTCCCGGGTGTACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATGACCTATGAAAG
CTGCCAGATGTAAGTGGGCCCGGCCTGGGAGAGGCGGGTCGTTACAAAA