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Detailed information on CNT30554279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 2e-117

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697041Oryza glaberrimaOryza sativa94.0292.1890.75519forward
CNT30109982Oryza glaberrimaOryza longistaminata70.1170.3689.92387forward
CNT30103292Oryza glaberrimaOryza rufipogon73.3777.2991.6405forward

Expression of CNT30554279

Peptides detected in this lncRNA

>peptide 1 (55 aa)
RRCCASDAGRHSHRLLEEEEVLKAQESKRGKGQKKRGKVGDFMGFHELISNLFSS*

Sequence

>CNT30554279
CGCCGCTGCTGTGCGTCCGACGCCGGTCGCCACAGCCATCGTCTCCTTGAGGAGGAGGAGGTTCTGAAGGCACAGGAAAGCAAGAGGGGAAAAGGACAAA
AAAAAAGAGGCAAAGTTGGGGACTTTATGGGATTTCACGAATTGATCTCGAATTTATTTTCCTCCTGAGTCAGGGTGTAGAGGGTTCCAACGTTGGAGGA
GTTGAGTCAGATTATCGAAGAAGTTAAGGTACCTAATGATATTGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACAACT
GAAATTTAGTTTTAGACTATATTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTATTTAAGGTTCTGATTCTTATTTTTCACGTGGGATTTGT
GGAGCTAGGATGGTTTGGATTGTGTAGATTATATCGGTATTGACTTTTCTTATAAATACCTGTCGTGGATGTTTGTATTTTTAGGGGAGACTGCCGAATT
TTCTAATAATTTTGGGACTTAGTTTTTTAGTGTATTTTGGTGTGCCATTCTA