CANTATAdb - search

Detailed information on CNT30554262

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695136	Oryza glaberrima	Oryza sativa	92.33	99.25	99.72	1059	forward

Expression of CNT30554262

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MISSLRGTKCTLPFLKLRVRFLLKEYTEFCMYKA*

>peptide 2 (49 aa)
MPARLRVVGNQETADTRAPVNPMMSQQQLRLLRMRSSLYLYYSPDRAGA*

Sequence

>CNT30554262
CATGGACGTTTTGGTAAAATTTGCTAAAGAGTGAGACTGTGAGAGAGACGGGCTGCCTTTAGTTTCACTGTGTCTCCATGATCTCTGCGATGTGACCGCT
CGCAGGTCGCAGAGCCCCCGCTCTGGCCTCTGCAAGGAGCACGCTTCTAAGAAGAACAATGCTGTGGCATACGCAAAGTCCACACAGGTGATACTAGTTG
GGTATCCTCCAAGGAGGACAACGGTGGCCCAGGTGAACGCCAGTGTGCCGAGGGCGTTGCCCACCCTCTCAACGGAGGCAACAACTCGAACAAAGCAATT
CAGCTGCTCTTCTGGCATCGCGCTATGCCAGCTCGCCTCAGGGTTGTAGGCAATCAGGAGACAGCTGACACGAGAGCACCGGTTAATCCAATGATGAGTC
AGCAGCAACTTCGATTACTACGCATGCGAAGTTCCCTTTATTTGTATTATTCTCCCGATAGAGCTGGAGCATAGTTTTCTTGACTGACATGCCAATGTTC
ATCTTCTAGGAAAATGTCACAGCTGATGGCATCTTCCTCTCTATCTACCTAAGAGTTGTACGCATTACAGAAAAAAAACAAACGGAAGAGAGTAAACTCC
AAACTCCAGAGGTGTTGGATTTGGTGATTGGTCATTGGTTGCGGCGGCGCCGCCGGCCTACCGGGCGTGGAACACCGTACGGCCGGAGAATGATTTCCTC
GTTGCGCGGCACGAAATGTACTCTTCCATTCCTGAAGCTACGGGTACGGTTTCTGCTTAAAGAATACACTGAATTCTGCATGTATAAAGCCTGAACCCGT
AGGTCTTCGGCTACCCGGCAGTGTTCAGATAAGCAACCCGGATGATTGTTTTGGCTTCTGGATTTATCAAATGAAGTCATTTTGCCTGTTGACTCAGACA
TAGGATTGCTTGACGTACCCATGATCAAGTAACATGTATATATAAAATCCGAGAAATGTTATGTGATCTAGTCTAAGAGAATGGTTGAATGAAGAGGATC
CTCTTAATTTGGAGATTAAAAACAAGTTGATTGAGATGCAATCTGAGTGTACGAGAAGCAGTTATAGAGTTGGCAATGGTATGTAAACCTCTGAAAATGA
CTGTTGCGTGAAACGGTGAAAGGTTGTCTATAAAGATTTTATTTACT