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Detailed information on CNT30554258

BLAST search results

BLAST vs Swiss-Prot:
sp|Q05968|PR1_HORVU, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694903	Oryza glaberrima	Oryza sativa	53.32	41.94	95.16	289	forward
CNT30596584	Oryza glaberrima	Oryza meridionalis	26.75	25.26	81.38	145	forward
CNT30102461	Oryza glaberrima	Oryza rufipogon	46.49	34.81	96.03	252	forward
CNT30576932	Oryza glaberrima	Oryza barthii	37.08	33.56	100	201	forward

Expression of CNT30554258

Peptides detected in this lncRNA

>peptide 1 (45 aa)
PFKLHADNGINFLIYFLLLFERQRTYIYNKIPVIIISHIYIILHT*

>peptide 2 (32 aa)
LSNYMQTMELIFSFIFFFYSNDNVHIYIIRSP*

Sequence

>CNT30554258
CCTTTCAAATTACATGCAGACAATGGAATTAATTTTCTCATTTATTTTCTTCTTTTATTCGAACGACAACGTACATATATATATAATAAGATCCCCGTAA
TTATTATTTCGCACATTTATATCATACTCCATACATAATATTATCACGTAACATAGTTAAAGTAAATACTGTATTAATAACTTATTAAGCAGAGAGAGTG
AGGCCACGCTCGAAGGGGCGCTCTCCCTGGAAGTTGCCGTCGTACAGATCCTTCTCCCCCACCCACATGTTCACCGCGTCCGCCGCCGTCCACTCGCCGC
CGGCGGAGCCACCGAAGAGGTTCTCGCCGTAGCCGGCCTTCTCCCAGCTGCCGGAGTGGATGAGGGCGCAGTCGCCGGCGCGCTCCGCCGCGTAGTTCTC
CGCGTACGCCGCCACGGCGTCGTCCCAGACCACCTCGCCGACGCCCTCCACGCCGCGCGCCGCGTTGTGGAGGTCCACGAAGTCCTGCGGCGAGTTCTGC
GCCGCCGCCGGCGTGGTCGCCATGGCCGCCACAACCACGGCG