Detailed information on CNT30554227


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694568Oryza glaberrimaOryza sativa10074.5199.712043forward
CNT30107579Oryza glaberrimaOryza longistaminata80.9675.3597.71654forward
CNT30102106Oryza glaberrimaOryza rufipogon10092.6199.712043forward
CNT30576675Oryza glaberrimaOryza barthii10094.8999.92043forward

Expression of CNT30554227

Peptides detected in this lncRNA

>peptide 1 (37 aa)
HASLSRPGTVRCLALAPPLRRGVVAGRKKEGATWRQL*

>peptide 2 (39 aa)
MGARHGSSRKDVEVLVLLSRRPCRQYVQPGSSNIWLQNA*

>peptide 3 (39 aa)
MGSEERAAALQVFVRPIRHRFLLFTENHPIHFLGFPRLG*

>peptide 4 (40 aa)
MVFLDGIGGKGGSPPGFCASHSTPISSFYGESSDPFPRFS*

>peptide 5 (30 aa)
MISETRRFWPYSWGEQRHKVAQPLHRRTSP*

>peptide 6 (31 aa)
MNSKGKGTSYGTRILQHQLLHPQHLHCSNRH*

>peptide 7 (32 aa)
MPQQGTKYMIPLRHIHMEVNRESLLRTVILED*

>peptide 8 (45 aa)
MEVPERMLKCLSSLAGDHAANMFNPGAAISGYRMHKCLVNTSINF*

>peptide 9 (44 aa)
MSICSCKNVDELKRKRYLIRYSHSTTSASASSTFTLLKSTLIRK*

>peptide 10 (77 aa)
RVVVSSWDCEVPRSCAAAAERGGRREKEGRRYMAPTLTDPDGVPRWDRRKGRQPSRFLCVPFDTDFFFLRRIIRSIS*

>peptide 11 (55 aa)
MLVVHQVSVQVLGNQIKPLLQYQLLLLMASSVEHPFHATTRNQIHDPVEAHPHGS*

>peptide 12 (46 aa)
MLKTSEAMHIQGNYWLISWLVVCSALLQILGNRCCKCRHAMPLPSPC

Sequence

>CNT30554227
CACGCGTCGTTGTCTCGTCCTGGGACTGTGAGGTGCCTCGCTCTTGCGCCGCCGCTGCGGAGAGGGGTGGTCGCCGGGAGAAAGAAGGAAGGCGCTACAT
GGCGCCAACTCTAACGGATCCGGATGGTGTTCCTCGATGGGATCGGAGGAAAGGGCGGCAGCCCTCCAGGTTTTTGTGCGTCCCATTCGACACCGATTTC
TTCTTTTTACGGAGAATCATCCGATCCATTTCCTAGGTTTTCCTAGGTTGGGGTAGTATATTTGTTTTCTGTAATCCTTGATCTAATCAAGTAGCCGCAG
TAATTCATATGCGATGTTATCTAATTTTCCCCTATCCGCTTTCTGATTGGCACCATAGTACATTTGTTTTTACCCTTGACTAAATTACAGTTCAGAGTCT
AGTTCAGTTTCATTGTTCTTTGGTTCAAAGGGTATTCGTTCAAATAAGCTCTATATATTGCTTAAGTGGGAAAGGAAAGGTTTTAATTCAGAAAGTAATC
TATTCATGTTTAAATTTTGGCCACCCGTATATTTTCTGAAAAAAAAAAATGAATACATAAAGGATGTCGTATTATTAAAGTGTGTTGTGTGACTTGTGTC
CTAAATATAAGCATCGAGCTCTCGTTCATCGTATTCTAACCATTTAAAAATCATTAGTGGTCAAAGTTGAAATAGTGCTTGTCAACAGTGACTGGAATTT
GGGAGACCTTGTGTACACTTTTAACCTTTTTTATACTGCATAGCGATTCATCATAAGTTTGTTCTGTACTATGTCCATTTGTTCATGTAAAAATGTAGAT
GAACTCAAAAGGAAAAGGTACCTCATACGGTACTCGCATTCTACAACATCAGCTTCTGCATCCTCAACATTTACATTGCTCAAATCGACACTAATCAGAA
AATAATCTTGTTGAAGAAGAGGTTTCATTAGATTTCAGCTAGCCATGGTCAAACTAAGAGATGTGGTTAACTCTTCCTTCGAGTACTAGTTGTAAATCGC
TCAACTAATCTGTAAGCTATGCTAGTCGTACATCAAGTATCTGTGCAGGTGCTAGGTAATCAGATCAAGCCTTTGCTGCAGTATCAACTTTTACTACTAA
TGGCATCATCAGTCGAGCATCCTTTCCATGCCACAACAAGGAACCAAATACATGATCCCGTTGAGGCACATCCACATGGAAGTTAACCGTGAAAGTCTTC
TTCGCACCGTAATTCTCGAAGACTAGAACTTTTGGAGTCACCGTGACATTGATACCCAGTGGAGCAGACACGAAAGCATGAAGGAGACCATGATGGATAT
GCACCTTTGACAAGAGCAGCTATTCCTGTAACATGGGGGCACGCCATGGAAGTTCCAGAAAGGATGTTGAAGTGCTTGTCCTCCTTAGCAGGAGACCATG
CCGCCAATATGTTCAACCCGGGAGCAGCAATATCTGGCTACAGAATGCATAAGTGTCTTGTAAACACATCAATAAACTTTTGACTGGTAGCTTCGTTTTT
CAATTCCGATTACCTTCAGAATCTCCGGTGTCAATGAATTTGGGCCTCTTGAAGAGAAGGCCGCCACCCGGGGAGCATCTCTAGAACCTAAAATCGTCTT
CGCTGGTGAAATTTGATGGTGAGTTTGCCTCTCCCCGCTGGCATTGCCCTCTCCATCTTGTAGGAACCGGAGGCATTCCATGATCTCTGAAACTAGGAGA
TTCTGGCCATATTCCTGGGGGGAACAGAGGCACAAGGTAGCTCAGCCGCTGCATCGACGGACAAGCCCATGAAATCCCATGAATGAGTGGTGTGGAGGCT
CCTCTTTGTGTTTGGGAACACTGAGATGACACCAGGCATATCTGCAGAAGTGTGCAGCAGAGTTAGCTTTCAGTCATCATCACACCAGGATCACGTGTCA
GGATGCTAAAGACATCAGAAGCCATGCATATACAAGGAAATTACTGGCTAATTTCATGGCTTGTTGTTTGTTCAGCTTTGCTGCAAATCCTTGGAAACCG
TTGCTGTAAGTGTAGACATGCGATGCCTCTGCCTTCTCCATGC