Detailed information on CNT30554224


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693084Oryza glaberrimaOryza sativa20.0482.7297.01402forward
CNT30109481Oryza glaberrimaOryza longistaminata96.6697.3495.361939forward

Expression of CNT30554224

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MGCLWLSKLLSRGSWCANGCGMPRMRRRSVTHLFAHHGCLFASIVAWYQ*

>peptide 2 (99 aa)
PRRAPSPRCVAIPGPSRASKRQEEEEDLLSCCQAGPTSLSSLKPLTSRARAFFPPLAADSFVFALRARVRRSPGRRFRRRRPQPCARQAPLITLPLYFQ*

>peptide 3 (58 aa)
ASPRPIAAVRRHPRAEPCKQATGGGRRPPELLPSRPHLPFLSQATDKPGPRLLSSIGR*

>peptide 4 (40 aa)
MKMKMSTRPPRSISRSKPSMKTSRCFVPSPKLRLWNKLVA*

>peptide 5 (57 aa)
MRFSWVSFGKALSRTSGTGQYRCKFRVVWVKRATSAEINELFEQPCPWSRASVRCFS*

Sequence

>CNT30554224
GCCTCGCCGCGCCCCATCGCCGCGGTGCGTCGCCATCCCAGGGCCGAGCCGTGCAAGCAAGCGACAGGAGGAGGAAGAAGACCTCCTGAGCTGCTGCCAA
GCCGGCCCCACCTCCCTTTCCTCTCTCAAGCCACTGACAAGCCGGGCCCGCGCCTTCTTTCCTCCATTGGCCGCTGACAGCTTTGTTTTCGCGTTAAGAG
CCCGAGTTCGAAGAAGCCCCGGACGCCGCTTTCGAAGGAGAAGACCCCAACCCTGTGCAAGGCAAGCCCCTTTGATCACATTGCCCCTATATTTTCAATG
ATATGTTGTTTGCAAAGATGCATTGTTTAGTTCACACGATTAACATGTTTAGGCCTCGGATTGTTTATACAACCGACGGACCAACCTAGTAGTCGCACTT
ATACTTCATAGGTTGATGTTTCCATACCTTTGATAGCTCCACAAATATTTGCGCCGGTATCGTTATACGATTACCGAGGTAGTTCCGCTTAGCCACGCTT
ACGTTGTTGCCGTGTGGGAAACTTGGGTTATTCCAAATTACATGTTTACAAATCCGGTATGTTGTACCGAGGTGTTGTGAAATAAAATGTATTGTGAAAG
TGGTGATGATGCGGAGTCATTCCTTTGTGGTTTGGCTACGTATTGTCGTTAAGGACCGATTCCTTTGGGAAATCCATCCGAACACGTTATAGTGCGACCA
CACGGGTATTATGGGATGCCTCTGGCTAAGTAAATTGTTATCACGTGGGAGTTGGTGTGCCAATGGTTGTGGAATGCCGAGGATGAGGAGACGAAGTGTT
ACACATTTATTTGCCCATCATGGGTGTCTTTTTGCCTCTATTGTGGCGTGGTACCAGTAGGAGTAGGAGGCATCATCGGTATTTCCTGAGTGGATGACGG
CTGTTATTGCCTGATACTCGGCTATGGATCTTAGCCCAACTAGGTGGCATGCGATTTTCATGGGTTAGCTTTGGAAAGGCCTTATCACGAACTTCCGGTA
CCGGCCAGTACCGGTGTAAATTTCGTGTCGTGTGGGTAAAGCGTGCAACCTCTGCAGAGATTAATGAACTGTTCGAACAGCCGTGCCCATGGTCAAGGGC
GAGTGTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAAGGTTTGTGGAAAAGTGGTTACTGAAAAGGGAGCGTTACCATAGTCCGCCTGTGTGGCAG
ACAGCTAACCTGGGTGGTTAGGAACGGGTCTGTGTGACCTGGGGTGTCGTCCGACACTGAGGTGTTGTTAGGGCCATGATGATGGCGATGTTGTGCTGGG
ATAACCAGGTGTTTTGTGTGGATTAGTGTTGTTGTGGAAGTGAGAAGGAACCAAGAGGAAACAAATTAATTGTTGTTCGTTAATCGTGACAAGTTGTTGC
AAAGCAACTTGTGGAATGGGTCGAGGCGTGAGCCTCCTCCCGACAACTAAAACTTGACTCACTCACTAGGAGTTTTGTGAAATAAATCACTTTGCCAAAA
AGGCAGCTTTCGCAAATAAAACCGTAGCCTCCTTGTTAAACCGACATGTCATCCTTTTCCCCGGCTTGCTGAGTACGTTAAAGTACTCACCCTTGCCCCT
TATAATAATATATAGAGTATGAAGATGAAGATGTCAACCCGACCGCCGAGGAGTATCTCCAGGAGCAAGCCAAGTATGAAGACTTCTAGATGTTTCGTGC
CTAGCCCCAAGCTTCGCCTGTGGAATAAGTTAGTTGCCTAGGTTCTTTGCCTAGTGCGTAGTCGCTTAGTTCTCCGTGCTGTTCGCTTCTGCGCCGTCGT
TTTTATGTTTTTCTGTGCTGTTGTGTTGCTCATCTATGGGCCTGTCCATGATAGCAACTTATATAAGGACTACTACCCAGTGATGTAATAAAATAGTTTA
CTTTGATTCCACATTTATTCTGTGTGTACCAGCTAGTGTATCCTGGGACTGGTACTATATCACAGGTAATGCATAACACCCCGGTGTGATTTAGTTGTGT
TAATGG