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Detailed information on CNT30554216


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH8|ATPF_ORYNI, E-value = 2e-86

BLAST vs NONCODE:
NONCQUT006914, E-value = 1e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Oryza glaberrimaOryza sativa96.1711.0999.84627forward
CNT30678565Oryza glaberrimaSetaria viridis26.9919.1797.73176forward
CNT30703171Oryza glaberrimaQuercus lobata73.934.0484.44482forward
CNT30282912Oryza glaberrimaChenopodium quinoa77.7647.2986507forward
CNT30505351Oryza glaberrimaNicotiana attenuata66.112.486.54431forward
CNT3095993Oryza glaberrimaSolanum tuberosum53.378.783.62348forward
CNT30301052Oryza glaberrimaTriticum aestivum90.4923.8696.27590forward
CNT30222903Oryza glaberrimaHordeum vulgare21.7849.8296.48142forward
CNT3086153Oryza glaberrimaVigna radiata21.9364.7183.22143reverse complement
CNT30541450Oryza glaberrimaBrassica napus71.9316.6882.94469forward
CNT30511193Oryza glaberrimaSolanum lycopersicum50.7718.6883.38331forward
CNT30145240Oryza glaberrimaMedicago truncatula26.0730.5891.76170forward
CNT30660677Oryza glaberrimaTriticum dicoccoides96.7847.396.04631forward
CNT30598585Oryza glaberrimaFraxinus excelsior70.8654.1687.01462forward
CNT3018020Oryza glaberrimaZea mays96.6315.394.92630forward
CNT30205079Oryza glaberrimaHelianthus annuus81.973.8685.02534forward
CNT30689283Oryza glaberrimaTriticum urartu73.3118.8496.03478forward
CNT30364459Oryza glaberrimaSorghum bicolor15.0323.9685.7198forward
CNT30621081Oryza glaberrimaCajanus cajan71.3244.5483.23465forward
CNT30409854Oryza glaberrimaPapaver somniferum71.0169.8385.75463forward
CNT30121210Oryza glaberrimaCitrus clementina81.913.7185.58534forward
CNT30551824Oryza glaberrimaOryza brachyantha26.8471.7298.29175forward

Expression of CNT30554216

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAPRMLILARIVRKCNSVFKQLFRVPRAPCTACWKTRCRT*

>peptide 2 (32 aa)
MVPLRNSSEFRIVLKILCFRLSNKSFNTPFPK*

Sequence

>CNT30554216
TAGTGTTTCTTTACTATTTTTTTTTCGGAAGCAAGGGGAAAAATAATGCCTAAATTCTAAAGGAAAGTAGAAGTTCAAGGCCTAATTAATTTAACTCTTC
CATTCCATGGCCCCGAGAATGCTAATATTAGCACGAATCGTACGGAAATGTAACTCGGTATTCAAACAACTATTCAGAGTTCCTAGAGCTCCTTGTACGG
CTTGTTGGAAAACCCGTTGTCGGACCTGATTCATCGCCCTTTGTTTTTCAAAATAAAGGGTTTCGTTTTTAGACTTTTCTAATTGTTCCAAACTAATAGA
AGTGGCATTAATCAAATTTGCTTTTTTCTCGTTCTATCTCAGAGTATCCATTCATTCGATACTCATCCGCTTCTAGTTCGACTTTCTGTAATCGAATTCG
AGCTTTTTCGAGCTGCTCAATGGTTCCTCTACGCAATTCTTCCGAATTTCGAATAGTACTCAAGATCCTCTGTTTTCGATTATCTAATAAATCTTTTAAC
ACTCCCTTTCCAAAATAAATCAATACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATATCGGTATTAAGCCCGAAACTCCCAGCGGATG
GCCAGTGAGCTAAAAAAACGAAAGAATGGGTTACATTTTTCATATGCTCTCC