Detailed information on CNT30554197


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002948, E-value = 4e-161

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Oryza glaberrimaOryza sativa42.6810098.53204forward
CNT30319789Oryza glaberrimaAsparagus officinalis27.4162.9884.73131reverse complement

Expression of CNT30554197

Peptides detected in this lncRNA

>peptide 1 (63 aa)
EPTLAVSRARVSQLRRHGTHGWCRPGVVTQHGTCAGTGHMDVAKRGRSWPGVDRRGRRSLLRG*

>peptide 2 (33 aa)
MGDRPGNSSREHTSEDKVCRKDMCWSVRAVYDL*

>peptide 3 (61 aa)
QSRLSRFHGRVCRSCAGMVRMAGVDREWLHSMAHALALDTWTWPREDVPGLGLIDGGVDLS*

Sequence

>CNT30554197
CAGAGCCGACTCTCGCGGTTTCACGGGCGCGTGTGTCGCAGTTGCGCAGGCATGGTACGCATGGCTGGTGTAGACCGGGAGTGGTTACACAGCATGGCAC
ATGCGCTGGCACTGGACACATGGACGTGGCCAAGAGAGGACGTTCCTGGCCTGGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGGTGAGGGTGT
AACATCCCGGCCTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAAGGTTAA
GCGTGCTTGGCCTGGAGCAATTTGGGATGGGTGACCGACCGGGAAATTCTTCCCGGGAGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTG
GTCTGTGAGGGCAGTCTATGACCTATGAAAGCTATCAGATGTAAGTGGGCCCGGCCTGGGGGAAGGCGGGCCGTTACA