CANTATAdb - search

Detailed information on CNT30554123

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005634, E-value = 2e-93

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692959	Oryza glaberrima	Oryza sativa	37.71	63.69	89.61	356	forward
CNT30597133	Oryza glaberrima	Oryza meridionalis	31.78	12.02	87.33	300	forward
CNT30110523	Oryza glaberrima	Oryza longistaminata	37.61	98.07	89.01	355	forward
CNT30100489	Oryza glaberrima	Oryza rufipogon	37.82	47.04	89.64	357	forward
CNT30576100	Oryza glaberrima	Oryza barthii	37.61	90.79	89.01	355	forward

Expression of CNT30554123

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAHRGRRSAVVLLNTGHRRHLPNPSSPILE*

>peptide 2 (77 aa)
ASPPPSCVSTHHFPPLSRRNREGELQLSSSISSLPAAKKKDAATRRRDIVITNSFSFRIPHFMPTTLPFDTISFHPL*

>peptide 3 (68 aa)
FTSSQLRFHTSFSTSKPKKPRGRAPALLFHLFVAGRQEKGRRNPSSRHCHHQLFLVPYSSLHAYHFTL*

Sequence

>CNT30554123
GCTTCACCTCCTCCCAGCTGCGTTTCCACACATCATTTTCCACCTCTAAGCCGAAGAAACCGAGAGGGAGAGCTCCAGCTCTCCTCTTCCATCTCTTCGT
TGCCGGCCGCCAAGAAAAAGGACGCCGCAACCCGTCGTCGAGACATTGTCATCACCAACTCTTTCTCGTTCCGTATTCCTCACTTCATGCCTACCACTTT
ACCCTTTGACACCATCTCATTTCATCCATTGTAGCGACGGAAACGCCGCCGTGCCCACGGGTGTTCCAGTGCGTGCACCGGGCGCCGCCGCAGCGACATC
GTCGCCGTTGCCGTCGATTTAGACCAAGCCGGAGCGAGCCACCACGCCACCAGCTTCGCGTCGTCGTCCTCTCCATTTCCCCTCAAAAATCTTGAAGAAT
GGCGCATCGAGGAAGGAGATCGGCCGTCGTCCTCCTCAACACCGGTCACCGTCGCCATTTGCCGAATCCATCTTCTCCGATCTTGGAGTAGTTTGAGCTG
TCGCCGTCAACCCGAAGGAGTTTGCCGCCGCCGGACCTGTTCGCGAGCTATTACGGACGACCAAGCTTCGCCAACCTTGTCTAGCATCTCGATGATTGCT
TAACCGGTGAAGAAGTGATTTAGGTGCTAACATTTTCCAGTTGCAAGGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATCGACTGCTTCTTCCAGGAC
TTGAACTTGATGGTGTAAACCCCTAGTCGGTGTGCTTGAGGATTGGATAGTCAAGCTTCCGCTGTTCTCTTATATTTATTTGGCCGGTCGGCCTATGTAA
CTATGAAGTAGTTGTGATTTAGATCATTTCCGTCTTAAGTATATTTTGCTATGTATTTTCATGCTTAGGATGAAAGTGTGAATCTAGTGCACATCCTGGG
AACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTTG