Detailed information on CNT30554117


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102269Oryza glaberrimaOryza rufipogon25.3714.9797.76223forward
CNT30574631Oryza glaberrimaOryza barthii75.0963.5898.48660forward

Expression of CNT30554117

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSNCLIIFSCTIMYTHHKHRYIVKIANGNINDIELQIEM*

>peptide 2 (78 aa)
MAPYSQGKLLGARSMLTTPLPAAANVPAHLPLAGKWCSPWAIEEDDGLEAGCRGGAAVAGGRSRGRHGDLEQGEVMQS*

>peptide 3 (45 aa)
MCLHTCRWLGSGAHHGPSKRTTVSRQAAGVGRRWLAEGAAVAMET*

>peptide 4 (97 aa)
PELHHKAVKAHPKALAHGAILSRQAAGSEVNAYHAIASCCKCACTPAVGWEVVLTMGHRRGRRSRGRLPGWGGGGWRKEPRSPWRLRAGRGHAVLMD*

Sequence

>CNT30554117
CCTGAACTGCATCACAAAGCAGTGAAAGCACATCCAAAAGCTCTTGCACATGGCGCCATACTCTCAAGGCAAGCTGCTGGGAGCGAGGTCAATGCTTACC
ACGCCATTGCCAGCTGCTGCAAATGTGCCTGCACACCTGCCGTTGGCTGGGAAGTGGTGCTCACCATGGGCCATCGAAGAGGACGACGGTCTCGAGGCAG
GCTGCCGGGGTGGGGCGGCGGTGGCTGGCGGAAGGAGCCGCGGTCGCCATGGAGACTTAGAGCAGGGAGAGGTCATGCAGTCCTGATGGATTAGGTTGGG
CTTGCTCTGGGATCGACCAAGCCTGTCACAGGTGAATGTCTAACTGCTTAATAATTTTTTCTTGTACTATAATGTATACACACCATAAGCATAGATATAT
TGTGAAGATTGCAAATGGAAATATTAATGACATTGAACTGCAGATCGAGATGTAAAAAAAGCCCAATTTTGTGCCTGAGTGTTTGCTTTATATAAATAAA
AGAAAATTTCAAGAACCAATCCATATGTTGAATATATTTATAATAAAGGAGGACAACTAAGATAGAAAATATCAAAAGCTTATTCTAGTTTCTACAGATC
TAGAAATGCTTGTCTTGCAGATTTTCTGATGGGTCATTGGGGACCTGCAAGATTGGTGTACAACTACATTAGTTGGGATGAAGTGTGAAAAAAATATAAC
TTGGATATGACCATGTTTAAATGGACTGATACCTCACTTGGCATCTGATCATTCTCATTCGACACGGTGAAATTAGGAATTACTTCAGATGTTGTAGAAG
TTCCACCAGCATTCTTGTCCACTTTAGATTTACCTGTCAGATTTAAAATTTATTAGCCCTTTATATATAATTCACTATA