Detailed information on CNT30554111


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005633, E-value = 3e-165

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694079Oryza glaberrimaOryza sativa91.3610099.55444forward
CNT30106577Oryza glaberrimaOryza longistaminata43.4210099.53211forward
CNT30102126Oryza glaberrimaOryza rufipogon92.5910099.11450forward

Expression of CNT30554111

Peptides detected in this lncRNA

>peptide 1 (55 aa)
GSRPTPAFPLILGREKHVENIHEMAQDAARAAAGDSKATATVRWRSPLRWPPYHR*

>peptide 2 (65 aa)
WIQAYPGLSPHSGPGKTCGKYPRDGAGCSACGGGRLKGDGDGEVALSPPVATLSPMKRAIVKVMG*

>peptide 3 (41 aa)
DPGLPRPFPSFWAGKNMWKISTRWRRMQRVRRRATQRRRRR*

Sequence

>CNT30554111
TGGATCCAGGCCTACCCCGGCCTTTCCCCTCATTCTGGGCCGGGAAAAACATGTGGAAAATATCCACGAGATGGCGCAGGATGCAGCGCGTGCGGCGGCG
GGCGACTCAAAGGCGACGGCGACGGTGAGGTGGCGCTCTCCCCTCCGGTGGCCACCTTATCACCGATGAAACGGGCTATTGTGAAGGTGATGGGGTGAGT
GTACTGGCTTGAGGGGTTTGTGAGGCTTATGTTCTTGGATGACCAGACATTCTAATTATGAGAAACGTCAAGGGCCTAATTGTGAGGGTGGCATCCTCAC
CCTGTGGCATTAATTGATGCTTCTGCTATATTTTTGCATGAATTCAGACATGTTTGTGAAATCATTATCTTTGAGCTCTAGGCCTTGATGATACTACAAT
ATCATTGTTTTAATGATTAATCCATAGTGCAATTCTTGCACTGAGACATCAGACGTGGTTATGTTAGCTGAATTGATGCATGTGTG