Detailed information on CNT30554101


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694484Oryza glaberrimaOryza sativa82.3497.4199.24527forward
CNT30673601Oryza glaberrimaSetaria viridis10.1623.0592.3165forward
CNT30398657Oryza glaberrimaTriticum turgidum8.5922.1892.7355forward
CNT30140884Oryza glaberrimaLolium perenne15.1627.1790.7297forward
CNT30368472Oryza glaberrimaSorghum bicolor15.1622.7291.7597forward
CNT30370564Oryza glaberrimaOryza glumipatula75.6210097.11484forward
CNT30102264Oryza glaberrimaOryza rufipogon87.1981.5899.1558forward
CNT30576633Oryza glaberrimaOryza barthii78.28100100501forward
CNT30117076Oryza glaberrimaOryza nivara78.7599.895.24504forward

Expression of CNT30554101

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MMMDRLTRHRLHPAIPKTIFNFITFRFENVTLENTSFKLPICSSVYP*

>peptide 2 (46 aa)
MLADDNGKSNLGTSGSLTVETRHWLHHNTHQWRQQGALSVIGREKK*

>peptide 3 (41 aa)
MSHLKIHLSNYLFVLLSTHETLAYLYTSLKLTIVLYLPMRH*

>peptide 4 (36 aa)
IDRPQLASGVPTYRKAILSQAKCKEEENDGISNNLI*

Sequence

>CNT30554101
AATCGATCGACCACAATTAGCTAGCGGAGTACCTACCTACCGCAAAGCAATTTTATCACAAGCTAAGTGCAAGGAAGAAGAAAACGACGGAATTAGCAAC
AATTTAATCTAACATACGCAAACTGATATTATCACAATGTTAGCCGATGACAATGGAAAGAGTAATCTAGGTACAAGCGGATCATTGACGGTGGAGACAA
GACATTGGCTGCACCACAACACCCACCAGTGGCGCCAACAAGGAGCGCTATCCGTTATAGGACGAGAGAAAAAGTAAAACATCACGATGTGAAGTGAAAC
TGAATAATTCTAGTAGACGATGATGATGGATAGGCTCACTCGTCATCGTCTTCATCCTGCAATCCCCAAAACCATTTTTAATTTCATCACTTTCCGTTTT
GAGAATGTCACACTTGAAAATACATCTTTCAAACTACCTATTTGTTCTTCTGTCTACCCATGAGACATTAGCCTATTTGTATACATCTCTCAAACTAACT
ATTGTTCTATATCTACCCATGAGGCATTAGCCTAATCAAAGTGTGAATCGTACTCCTAATCGTACAAGCCTCAGGCATAGTCAGCTAAGCTTCACACAAC
GAACTAATGCGATACTATTTTCTGAATTGATCACAAGGAT