Detailed information on CNT30554065


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 5e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673713Oryza glaberrimaSetaria viridis26.9322.6499.07108forward
CNT30583094Oryza glaberrimaEchinochloa crusgalli30.4260.798.36122forward
CNT30117062Oryza glaberrimaOryza nivara34.1659.57100137forward

Expression of CNT30554065

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVIWPPRARPKVTAGLTWPPEMLAPMATATNSPNPWRWRSRRRRRRRRGWR*

>peptide 2 (83 aa)
HAGAELDEDGADDGAEELGDPVEDAGEDGDLAAEGEAEGDGRVDVAAGDVGADGHRHEQPEPVAMAEPTPAKTKTRVEMNSAT*

Sequence

>CNT30554065
CCACGCCGGTGCAGAACTGGACGAGGACGGCGCCGACGATGGCGCCGAGGAGCTGGGCGACCCAGTAGAAGACGCCGGTGAGGATGGTGATCTGGCCGCC
GAGGGCGAGGCCGAAGGTGACGGCCGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGATGGCCACCGCCACGAACAGCCCGAACCCGTGGCGATGGCGG
AGCCGACGCCGGCGAAGACGAAGACGAGGGTGGAGATGAACTCGGCGACGTAGGCCTTGAGGGAGGCCGCGCTGAAGGAGTCATCGAAGCGGCCGAAGGC
GATGTTGCCCGACATGGCGACGACGGTGGCGCGCGCGGGGGAGAGCTGAGTGAGCAGAGGAAGAGGAAGGAGAGGATGTGATATGGGGGGTGGTCACTAA
G