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Detailed information on CNT30554052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END8|RR8_ORYNI, E-value = 3e-92

BLAST vs NONCODE:
NONOSAT001021, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450248Oryza glaberrimaSaccharum spontaneum15.0464.2297.71131forward
CNT30604550Oryza glaberrimaOryza punctata70.9528.2194.17618forward

Expression of CNT30554052

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFSVIFVDTTRTVPFLFMSAFLIEVSKSAIVSLPIRL*

>peptide 2 (30 aa)
MFSFFFSFWILKHIRETQSTNFLFDLYLVY*

>peptide 3 (53 aa)
MMVSFSRRTRNIPLGRASITKPSKVIFASLGVFFSLLFFFSVIFFFSYFSFFI*

Sequence

>CNT30554052
CCCCATCAGTATTCGTATAGAACTAGACCGGATCTTTCCTGAAATATAGCCCAGGATGATGGTGTCATTCTCTAGGCGAACGCGGAACATTCCGTTGGGT
AGGGCTTCCATAACTAAACCCTCGAAAGTAATTTTTGCTTCTCTCGGGGTTTTTTTTTCTCTCCTATTTTTCTTTTCTGTCATATTTTTTTTCTCCTATT
TTTCTTTTTTTATTTGAAAATAAAAAAACGTTGTATTTTTGTTTGAAAAATAGGAAGTTCAAGATAGAATTTGGGTACTATAACTATAGGTGGGGCGATT
ACCGCTATAGGCGGGGCGATTACCATATATAACATAAGACTTCTCCCCCAATTCTGTTTAGTCGAGCTTCTCGATCTGTCATTATACCTCGAGAAGTAGA
AAGAATAGCAATTCCCATTCCGCCCAAAACCTTAGGAATTCCTTGATAGTTGGCATAAATTCGTAAGCCAGGTCGGCTGATACGCTTTAAAAAGGTTCTA
GTTCTATATATTCCCTTTCTAGTCTTTCTCTTTTGATGTCGCAAAGTTGAAACCAAGAAATATCTGTTACTTTCCTGATGTTTCCGAACACTTTCAATAA
AACCCTCTCGTAGAAGTATTTTAACAATGTTTTCGGTAATATTTGTAGATACTACCCGAACAGTTCCTTTTTTATTCATGTCCGCGTTTCTTATAGAGGT
TAGTAAATCAGCAATAGTGTCCTTGCCCATAAGACTCTAATTCTAGGTTCCTCCTAATTTTTCTATAATCAACATGTTCTCTTTTTTCTTTTCGTTTTGG
ATTCTAAAGCATATACGTGAAACACAATCTACTAATTTTTTATTTGATCTATATCTTGTCTACTAGTATTT