Detailed information on CNT30553994


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT001252, E-value = 1e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281672Oryza glaberrimaChenopodium quinoa33.76101.2790.83240reverse complement
CNT30195004Oryza glaberrimaPisum sativum13.533.2284.3896forward
CNT30223508Oryza glaberrimaHordeum vulgare50.0759.5399.44356reverse complement
CNT30234846Oryza glaberrimaBrassica oleracea7.1721.2594.1251forward
CNT30229065Oryza glaberrimaAnanas comosus15.3329.7898.17109forward
CNT30627892Oryza glaberrimaDaucus carota87.48102.1388.75622forward
CNT30153321Oryza glaberrimaPrunus persica57.6784.5491.95410reverse complement
CNT3025558Oryza glaberrimaPopulus trichocarpa98.5986.5489.59701forward
CNT30150988Oryza glaberrimaBrachypodium distachyon98.1739.9897.99698forward
CNT30577653Oryza glaberrimaOryza barthii68.6480.5398.98488reverse complement

Expression of CNT30553994

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRTHYVASTSIIQALYTSLVRFFVGTTRNNELAKWICLS*

Sequence

>CNT30553994
GGGAGTCAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGA
AGAACTTGTCTTCTTTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCGAATCCATTCTTTTTCGAAATCGATTTCGAAAAAGAACTACTAATCCT
TAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGACCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAAT
AGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGTGATCCTTTTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAA
GGATGAGAACCCACTATGTAGCATCTACGTCGATAATTCAAGCATTGTATACGTCATTAGTCCGATTCTTTGTAGGAACTACCCGTAATAACGAGCTTGC
AAAATGGATCTGTTTATCATAAAGAGATTCGTTGTTCCTGACCCTGCTTCACCTTAATTGTTATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAG
TTCTGTCTTGGTCGGAGTGGGGATAGCATTTCTCTTCTGCATATCTATGGAGTTTTGCAAAACCCAAACACCTCAGAGATAGATATAGAGGTAGGAATTT
GTCGAACGAAC