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Detailed information on CNT30553971


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30527503Oryza glaberrimaEucalyptus grandis14.7746.8390.6296forward
CNT3020910Oryza glaberrimaCitrullus lanatus9.5427.9395.1662forward
CNT30576813Oryza glaberrimaOryza barthii98.7787.11100642reverse complement

Expression of CNT30553971

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSVWPEETFARLRFSHSLREESGLCPSYRYPWET*

>peptide 2 (36 aa)
MTASLHASISTVLGSLIWSYLRHSAVTKFPVLSRATI

Sequence

>CNT30553971
AGGCCGGCTGTGCTTGTGCTCACCTACAGGTCTGTCCTAGCATACAGTATAGAAAAAGACTGTGCTGGTTTTAAGAACGAGTGATTGCCCTTCTCCGACC
CGCACTGTAAAAATAGGATAGGTTCGATCTATGGTCATTGAGGGCCTCCTAAAAGGATCTACTAAATTCATCGAGTTGTTCTAAAGAATCAAAACGGTCA
GTTATTAACGGAATTCCTTGTCGTTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGG
ATCACTAAGGCCGACTTTCGTCTCTGCTCGACGGGTGAGTCTTACAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCAATGTCCGTCTGGCCTGAGG
AAACCTTTGCACGCCTCCGTTTCTCTCATTCGCTCCGCGAAGAAAGCGGGCTTTGCCCCAGCTACCGCTATCCTTGGGAAACCTAAAGAGCTGCCGAAGG
AAAGGGATGCAGTCTCTCCCAAATTTACAGTGCTAACATGACTGCATCTCTACACGCCAGCATCTCCACTGTGCTCGGATCACTGATATGGTCATATCTT
CGACACTCAGCAGTGACAAAGTTTCCTGTATTATCCCGTGCAACAATTCC