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Detailed information on CNT30553947

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695991	Oryza glaberrima	Oryza sativa	54.57	44.7	84.19	430	forward
CNT30596264	Oryza glaberrima	Oryza meridionalis	40.86	25.14	81.68	322	forward
CNT30370360	Oryza glaberrima	Oryza glumipatula	34.64	59.61	82.05	273	forward
CNT30102949	Oryza glaberrima	Oryza rufipogon	22.72	17.92	89.39	179	forward
CNT30575755	Oryza glaberrima	Oryza barthii	7.61	23.44	93.33	60	forward
CNT30117438	Oryza glaberrima	Oryza nivara	26.14	23.65	88.35	206	forward

Expression of CNT30553947

Peptides detected in this lncRNA

>peptide 1 (53 aa)
SIGAANLWERASRQLGTPVNSGRRRVAIDRRPASTNLGWSCCLAITFTTPRRL*

>peptide 2 (62 aa)
LHWCSQSLGARIASTWDTGELRAPPRSHRPSPGLHKPWLVMLPRHHLHHSTTTVKLGGIDAR*

Sequence

>CNT30553947
GCTCCATTGGTGCAGCCAATCTCTGGGAGCGCGCATCGCGTCAACTTGGGACACCGGTGAACTCAGGGCGCCGCCGCGTAGCCATCGACCGTCGCCCGGC
CTCCACAAACCTTGGCTGGTCATGCTGCCTCGCCATCACCTTCACCACTCCACGACGACTGTGAAACTCGGAGGAATCGACGCGAGGTGAACCACGGAGG
GAGATCCTCTTCTTCTTCCCCGTCTCCGGCCACTGACGTCATCCATCTCTCTCTCGCTGTCTGATCAAGACCGGAGGTACCCCGACGATGACAACCGAAG
TTGCCGCGTCGTCGCTGGACTGTGCTTCCTAGGCTAAGACTTGTCGAGCCACTCTAGCAGCTTGGGTTGGTTGCAGGTGAAGTCATTCTGGAGGAGGATG
ACTTCGAGGGTGATGATTCGTTCTTCCAGGACGGTTCTTACTAGGGTCTACCCTAGTCAGTTGCATAAAAGATCTTTTGGGTAGAAGATGCTTCCGCGAA
CCTAAATATTTGGCCGGTCGGCCATATGTATCTTAGAACTGAGTTGTGAGAGTTTTGTTAAAACTAGAACTCCTTATATTTGGATATCATGAGCTTGGAT
GAAAAGGTTTAGGGTGTTTCTTTTGTTAGGAACATACTAAACATGAGTATGATTTAAGGATATTTGAGATGTCGTAGATCTTTAGTCATTTTGTAAGTCT
CCTAAATGTGTAACACATCTGGTCGCCACCTTCGAGTGGTTTGACGGGCACATCTCAGGCTGAAGTCGAATGGCAAGCTAAAGGCCTG