Detailed information on CNT30553919


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004863, E-value = 3e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30241489Oryza glaberrimaAvena sativa27.3524.8180.98163reverse complement
CNT3011843Oryza glaberrimaZea mays27.6821.1384.85165reverse complement
CNT30689516Oryza glaberrimaTriticum urartu24.58.5682.88146reverse complement
CNT30345639Oryza glaberrimaEragrostis tef31.2125.5886.56186reverse complement
CNT30370198Oryza glaberrimaOryza glumipatula81.2110099.79484forward
CNT30434187Oryza glaberrimaPapaver somniferum20.9719.9482.4125reverse complement
CNT30643829Oryza glaberrimaCannabis sativa23.4915.6681.43140reverse complement
CNT30319727Oryza glaberrimaAsparagus officinalis21.4814.8581.25128reverse complement
CNT30101726Oryza glaberrimaOryza rufipogon90.9494.9299.45542forward
CNT30576293Oryza glaberrimaOryza barthii87.58100100522forward
CNT30496981Oryza glaberrimaDigitaria exilis32.0531.3687.43191reverse complement

Expression of CNT30553919

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MEPILNPVLRIPRWMSSQHPFSSCLQTYQWRPAAHLCLPPLSWCSNTRRGRKQTVLQPPQSSWSWVPGCRIP

>peptide 2 (47 aa)
MNFQKIKTAIQLCSHHSVKNYSSLSSKHKHNLVSSHYCTKPSVIGSV*

>peptide 3 (29 aa)
PVTNILFHSLRNKCEHVNCYMSLGYSIKR*

Sequence

>CNT30553919
TCCGGTTACAAATATATTATTTCACTCTTTAAGAAATAAATGTGAACATGTGAACTGCTATATGTCGTTGGGCTACTCAATAAAAAGGTGATTGATACAT
CATACAAGAGGGGGAATCTAACGTGATAATAGTCCCATAACATTGCTACACTTTTGTTGTCTTTTGCATACCCACAGACAAATAGAAACCTTCAAGTTAC
ACAGGTCATCATACTGTTATATGAACTTTCAGAAAATTAAAACTGCAATCCAACTCTGCAGCCATCATTCAGTCAAAAATTATTCCAGCCTATCATCAAA
GCATAAGCACAACCTAGTATCGAGCCATTATTGTACAAAACCAAGTGTCATCGGTTCAGTATAGAGGGCTAGAGGCGGACATGGAGCCAATTCTAAACCC
TGTTCTTAGGATCCCGCGGTGGATGAGTTCCCAGCATCCTTTTTCTTCATGTCTTCAAACTTATCAATGGCGACCTGCAGCTCATCTGTGCCTCCCACCG
CTCTCATGGTGTAGTAATACACGCCGAGGACGAAAGCAGACAGTCCTCCAGCCACCACAAAGTTCTTGGTCTTGGGTGCCAGGCTGCCGAATCCCG