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Detailed information on CNT30553900


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LRR5|DRL21_ARATH, E-value = 7e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30344971Oryza glaberrimaEragrostis tef28.457.9683200forward
CNT30104896Oryza glaberrimaOryza longistaminata72.5567.4697.84510forward
CNT30101614Oryza glaberrimaOryza rufipogon9971.2495.55696forward

Expression of CNT30553900

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLVVTDENPLATDSMVSLVSFISSKFSETHSHTRNWKYSFTLGSL*

>peptide 2 (35 aa)
EVLLLFGGSSNLKHSSIETDCARSCMASCITYPPL*

>peptide 3 (64 aa)
LKCCCCLEGHPILSIHPLRPTVQGHAWHHASHILLCDVGRRICLIVHQNSCSQVPQLFSFLETE*

Sequence

>CNT30553900
TTGAAGTGCTGCTGCTGTTTGGAGGGTCATCCAATCTTAAGCATTCATCCATTGAGACCGACTGTGCAAGGTCATGCATGGCATCATGCATCACATATCC
TCCTTTGTGATGTTGGAAGAAGGATCTGCTTAATAGTTCATCAAAATAGCTGCTCCCAAGTTCCTCAATTGTTCTCCTTCCTGGAGACTGAATGAACCCA
AGGGCCATCCATATTTGCACCAAGGTTTCTTTTTCGAACACATAATCTTTATGGAAGACTGAGCAAAACGCAAAACATCGCTTCAATATGGCAGGCAAAT
GATTGTAACTCAGCCTCAGTGCTGCAAGTGGGAGGCCTTTCAACTTCTTCACAATTTCCTTGCCTATAATTTCTAAATGTGGGTGCAAACTGGAGTCACC
ATCAGCAAATGCATAGCTCCTGAACAAGTTCCAGCAATCATTTTCAGATAACTGCTTTAGAAAGGTCCTCATTCCAAACATCATCAAGTACTAGAAGAAA
TCTTTTACCTTCCAGCTTTTTTGAGAGATCTTCTTGAAGCAAGTTCATGTTGGTCGTGACCGATGAGAACCCACTGGCAACTGATTCAATGGTTTCCTTG
GTAAGCTTCATTTCGTCAAAATTTTCAGAAACGCACAGCCACACCCGTAACTGGAAGTACTCCTTTACTCTTGGATCATTGTAGACAAGCTGTGTTAGAG
TTG