Detailed information on CNT30553869


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 1e-59

BLAST vs NONCODE:
NONORUT005134, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678235Oryza glaberrimaSetaria viridis41.1772.5283.56219forward
CNT30522059Oryza glaberrimaSetaria italica35.5338.8984.66189forward
CNT30189491Oryza glaberrimaSecale cereale18.6135.7482.8399forward
CNT3067447Oryza glaberrimaLeersia perrieri81.0276.2891.65431forward
CNT30596300Oryza glaberrimaOryza meridionalis96.2428.3399.41512forward
CNT30105837Oryza glaberrimaOryza longistaminata96.2480.1399.8512forward
CNT30101622Oryza glaberrimaOryza rufipogon96.2450.9599.8512forward
CNT30604101Oryza glaberrimaOryza punctata57.3398.3996.39305forward

Expression of CNT30553869

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MAPFGEGLAISMFEDVQEEVYPGQSIKCTPWNLTT*

>peptide 2 (47 aa)
MTQLSPLKYTRCGKAHPLSKVKSLESLRRRSSDCAFPSGPACMSKSL*

Sequence

>CNT30553869
GAATAGTTCAGAATTCAGAACAGAAGTAGTATGAAGCTTCTTGACACATGCATGCCAAAACATGGCTCCGTTTGGAGAAGGCTTAGCAATTAGCATGTTT
GAGGATGTGCAAGAGGAGGTTTATCCAGGACAATCTATAAAGTGCACACCATGGAACCTGACAACTTGAAGCTCACCGAATTTCTTGGTTTCACTCATCA
TGCATAAGCCAGCAAAGTAGCCAACACAATCGAAAATACCAAAACCGAGAGTGTCAATGGTTGTTTTGTCAGAGGACTTGCATTAGGCAACCATGGATAT
GCATCCGGAGGTGGCATGACACAATTATCACCATTGAAGTACACGCGGTGTGGGAAGGCCCATCCCTTGTCAAAGGTGAAGTCCTTGGAATCCTTACGCA
GAAGAAGTTCTGACTGTGCATTTCCAAGTGGACCAGCTTGCATGAGCAAATCGTTATAGAACTTAACTCCCCAGAACATCGCAGTATCATCTAAAATAGA
AGGAATAAACTTCATCAGAGAGAGAGAGAGAG